Structure of PDB 4l05 Chain A Binding Site BS02

Receptor Information

>4l05 Chain A (length=154) Species: 235 (Brucella abortus)

ESTTVKMYEALPTGPGKEVGTVVISEAPGGLHFKVNMEKLTPGYHGFHVH
ENPSCAPGEKDGKIVPALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSAN
ADGKVSETVVAPHLKKLAEIKQRSLMVHVGGDNYSDKPEPLGGGGARFAC
GVIE

Ligand information

• Ligand ID: CU
• InChI: InChI=1S/Cu/q+2
• InChIKey: JPVYNHNXODAKFH-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Cu+2]
  CACTVS 3.341: [Cu++]
• Formula: Cu
• Name: COPPER (II) ION
• DrugBank: DB14552
• PDB chain: 4l05 Chain A Residue 202

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4l05 Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus.
• Resolution: 1.098 Å
• Binding residue (original residue number in PDB): H48 H50 H73 H128
• Binding residue (residue number reindexed from 1): H48 H50 H73 H128
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 1.15.1.1: superoxide dismutase.

Gene Ontology

Molecular Function

• GO:0004784 superoxide dismutase activity
• GO:0005507 copper ion binding
• GO:0016209 antioxidant activity
• GO:0016491 oxidoreductase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006801 superoxide metabolic process
• GO:0019430 removal of superoxide radicals
• GO:0098869 cellular oxidant detoxification

Cellular Component

• GO:0042597 periplasmic space

External links

• PDB: RCSB:4l05, PDBe:4l05, PDBj:4l05
• PDBsum: 4l05
• PubMed: 26459556
• UniProt: P15453|SODC_BRUAB Superoxide dismutase [Cu-Zn] (Gene Name=sodC)