Structure of PDB 4jv2 Chain A Binding Site BS02
Receptor Information
>4jv2 Chain A (length=341) Species:
273057
(Saccharolobus solfataricus P2) [
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MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEA
RKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIE
IASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVF
AKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGIN
KLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVT
MKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGR
TFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI
Ligand information
>4jv2 Chain C (length=13) [
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gggggaaggattc
Receptor-Ligand Complex Structure
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PDB
4jv2
Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
Resolution
2.74 Å
Binding residue
(original residue number in PDB)
P184 G185 G187 I189 T190 V296 S297 R298 T301 K339
Binding residue
(residue number reindexed from 1)
P184 G185 G187 I189 T190 V296 S297 R298 T301 K339
Enzymatic activity
Enzyme Commision number
2.7.7.7
: DNA-directed DNA polymerase.
Gene Ontology
Molecular Function
GO:0000287
magnesium ion binding
GO:0003677
DNA binding
GO:0003684
damaged DNA binding
GO:0003887
DNA-directed DNA polymerase activity
GO:0046872
metal ion binding
Biological Process
GO:0006260
DNA replication
GO:0006261
DNA-templated DNA replication
GO:0006281
DNA repair
GO:0006974
DNA damage response
GO:0042276
error-prone translesion synthesis
Cellular Component
GO:0005737
cytoplasm
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Molecular Function
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Cellular Component
External links
PDB
RCSB:4jv2
,
PDBe:4jv2
,
PDBj:4jv2
PDBsum
4jv2
PubMed
23947567
UniProt
Q97W02
|DPO4_SACS2 DNA polymerase IV (Gene Name=dbh)
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