Structure of PDB 4j7g Chain A Binding Site BS02

Receptor Information
>4j7g Chain A (length=448) Species: 31958 (Amycolatopsis orientalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVRPRDHHDYADRIALSAATTDGVQMRTEDVRAWIAERRDANVFHVERIP
FADLDQWWFEGVTGNLVHRSGRFFTIEGLHVIEHDGPHGDGPYREWQQPV
IRQPEVGILGILAKEFDGVLHFLMQAKMEPGNPNLVQLSPTVQATRSNYT
NVKLIEYFAPPDPERVIVDVLQAEQGSWFFRKSNRNMIVETVDDVPLWDD
FCWLTLGQIAELMHEDETINMNSRSVLSCLPYQDITPRALFSDVQLLSWF
TNERSRHDVRVRRIPLADVCGWKQGAEEIEHEDGRYFKVLAVAVKGSISW
TQPLVESVDLGVVAFLVRKIDGVPHVLVQARVDGGFLDTVELAPTVQCTP
LNYAHLPAEEAPPFLDLVQNAPRSRIRYEAIHSEEGGRFLGVRARYLVID
ADEAIDPPPGYAWVTPAQLTALTRHGHYVNVEARTLLACINAAAAQPR
Ligand information
Ligand ID1JB
InChIInChI=1S/C16H26N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h4,7-13,15,19-22H,3,5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t7-,8+,9-,10-,11+,12+,13-,15-/m1/s1
InChIKeyZOSQFDVXNQFKBY-FQLHZTMTSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)O
ACDLabs 12.01O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3O)C)O)O)C
OpenEye OEToolkits 1.7.6C[C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)O
CACTVS 3.370C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.370C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@H]1O
FormulaC16 H26 N2 O15 P2
Name[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5R,6R)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate;
dTDP-fucose
ChEMBL
DrugBank
ZINCZINC000008220774
PDB chain4j7g Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4j7g Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
W67 F83 A154 T155 N158 Y159 N238 W320 Q322 E405 R408
Binding residue
(residue number reindexed from 1)
W57 F73 A144 T145 N148 Y149 N222 W300 Q302 E385 R388
Annotation score3
Enzymatic activity
Enzyme Commision number 4.2.1.159: dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase.
Gene Ontology
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:4j7g, PDBe:4j7g, PDBj:4j7g
PDBsum4j7g
PubMed23473392
UniProtO52793|EVAA_AMYOR dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase (Gene Name=evaA)

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