Structure of PDB 4c9d Chain A Binding Site BS02
Receptor Information
>4c9d Chain A (length=262) Species:
300852
(Thermus thermophilus HB8) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MPQAVVLELVGEKPPLYPARYAHGLFFALLSRVSPELAQKLHEAPRKPFT
LAPLPGPEGATLKGTLRLRLTTLDDGLFAPFLRALLEAAPDGLPLGDSSY
RLARVLATREGHPLAGATSWEELKEAPKREKATFRFLTPTVFATSKPGGR
TRYTPLPDPRLIAGSLLDKWQAHSPFPYNPKEEAALRELFELDLEVAGFR
NLRFHRVQAGKGFFPGFTGEATLRLWSQSLEAQEALGRLHALAFFSGVGA
KTPYGMGLAVPL
Ligand information
>4c9d Chain D (length=14) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
aagccucguagagg
...<<<.....>>>
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4c9d
Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases.
Resolution
3.0 Å
Binding residue
(original residue number in PDB)
E197 W228
Binding residue
(residue number reindexed from 1)
E195 W226
Binding affinity
PDBbind-CN
: Kd=3.9nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0004519
endonuclease activity
GO:0016788
hydrolase activity, acting on ester bonds
GO:0046872
metal ion binding
Biological Process
GO:0051607
defense response to virus
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:4c9d
,
PDBe:4c9d
,
PDBj:4c9d
PDBsum
4c9d
PubMed
24150936
UniProt
Q53VU8
[
Back to BioLiP
]