Structure of PDB 3vxv Chain A Binding Site BS02
Receptor Information
>3vxv Chain A (length=65) Species:
10090
(Mus musculus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
KPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGE
TFLKPEDFNFTVLPK
Ligand information
>3vxv Chain C (length=14) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gtctggtagtgact
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3vxv
Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
K82 R84 L85 S86 G87 K88 T89
Binding residue
(residue number reindexed from 1)
K12 R14 L15 S16 G17 K18 T19
Binding affinity
PDBbind-CN
: Kd=98.8nM
Enzymatic activity
Enzyme Commision number
3.2.2.-
Gene Ontology
Molecular Function
GO:0003677
DNA binding
View graph for
Molecular Function
External links
PDB
RCSB:3vxv
,
PDBe:3vxv
,
PDBj:3vxv
PDBsum
3vxv
PubMed
23316048
UniProt
Q9Z2D7
|MBD4_MOUSE Methyl-CpG-binding domain protein 4 (Gene Name=Mbd4)
[
Back to BioLiP
]