Structure of PDB 3vo0 Chain A Binding Site BS02

Receptor Information
>3vo0 Chain A (length=466) Species: 240015 (Acidobacterium capsulatum ATCC 51196) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPVRVGLSVDASALGHTIPPDYTGLSYEQAQMANPNYFSGANTQLAGFLR
TLGRQGVLRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVIT
PEAVNNLSEFLDKTGWKLIYGLNLGKGTPENAADEAAYVMETIGADRLLA
FQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPNAPFAGPDT
AYNTKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLG
ETAGLKQVEADTGLPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQA
AAGSTGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLG
AKLTDNSAAPLLTAYALRGTDGRTRIALFNKNLDADVEVAISGVASPSGT
VLRLEAPRADDTTDVTFGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKA
SGALLEFAKLAAALQH
Ligand information
Ligand IDGUF
InChIInChI=1S/C6H9FO6/c7-1-2(8)3(9)4(5(10)11)13-6(1)12/h1-4,6,8-9,12H,(H,10,11)/t1-,2-,3+,4+,6-/m1/s1
InChIKeyLDVYRSUUUDDWHG-LVBGKUAWSA-N
SMILES
SoftwareSMILES
CACTVS 3.370O[CH]1O[CH]([CH](O)[CH](O)[CH]1F)C(O)=O
OpenEye OEToolkits 1.7.6[C@@H]1([C@@H]([C@H](O[C@H]([C@@H]1F)O)C(=O)O)O)O
ACDLabs 12.01FC1C(O)C(O)C(OC1O)C(=O)O
OpenEye OEToolkits 1.7.6C1(C(C(OC(C1F)O)C(=O)O)O)O
CACTVS 3.370O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1F)C(O)=O
FormulaC6 H9 F O6
Name2-deoxy-2-fluoro-beta-D-glucopyranuronic acid;
2-deoxy-2-fluoro-beta-glucuronide;
2-deoxy-2-fluoro-beta-D-glucuronic acid;
2-deoxy-2-fluoro-D-glucuronic acid;
2-deoxy-2-fluoro-glucuronic acid
ChEMBL
DrugBank
ZINCZINC000098208971
PDB chain3vo0 Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3vo0 Structural and biochemical characterization of glycoside hydrolase family 79 beta-glucuronidase from Acidobacterium capsulatum
Resolution1.9 Å
Binding residue
(original residue number in PDB)
H109 A110
Binding residue
(residue number reindexed from 1)
H92 A93
Annotation score3
Enzymatic activity
Enzyme Commision number 3.2.1.31: beta-glucuronidase.
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0016020 membrane

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Molecular Function

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Cellular Component
External links
PDB RCSB:3vo0, PDBe:3vo0, PDBj:3vo0
PDBsum3vo0
PubMed22367201
UniProtC1F2K5

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