Structure of PDB 3tmd Chain A Binding Site BS02

Receptor Information
>3tmd Chain A (length=305) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKDKK
LRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNNAE
EVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISHHG
VTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSM
SPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGLRE
KDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQHL
NDILK
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain3tmd Chain A Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3tmd The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
Resolution2.641 Å
Binding residue
(original residue number in PDB)		D184 H212 H237 E238
Binding residue
(residue number reindexed from 1)		D183 H211 H236 E237
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3tmd, PDBe:3tmd, PDBj:3tmd
PDBsum3tmd
PubMed21990613
UniProtQ6MM30

[Back to BioLiP]