Structure of PDB 3qu1 Chain A Binding Site BS02

Receptor Information
>3qu1 Chain A (length=168) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MAVLEILTAPDPRLRVQSKQVTDVASVQTLIDDLLDTLYATDNGIGLAAP
QVGREEAIVVIDLSDNRDQPLVLINPKVVSGSNKEMGQEGCLSVPDYYAD
VERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPL
KQQMAMKKVKKHVKNRAR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3qu1 Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3qu1 Peptide deformylase from Vibrio cholerae.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		D96 H162
Binding residue
(residue number reindexed from 1)		D96 H162
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C91 L92 H133 E134 H137
Catalytic site (residue number reindexed from 1) G46 Q51 C91 L92 H133 E134 H137
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0043686 co-translational protein modification

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Molecular Function
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Biological Process
External links
PDB RCSB:3qu1, PDBe:3qu1, PDBj:3qu1
PDBsum3qu1
PubMed
UniProtQ9KN16|DEF2_VIBCH Peptide deformylase 2 (Gene Name=def2)

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