Structure of PDB 3jt3 Chain A Binding Site BS02

Receptor Information
>3jt3 Chain A (length=407) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPTKDQLFPLAK
EFLDQYYSSIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHAW
RNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSAI
TIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQG
WKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGL
KWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEE
VAKKMDLDMRKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFI
KHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNYRLTPSFEYQPD
PWNTHVW
Ligand information
Ligand IDJM2
InChIInChI=1S/C8H17N3O2S/c1-14-5-7(10)11-4-2-3-6(9)8(12)13/h6H,2-5,9H2,1H3,(H2,10,11)(H,12,13)/t6-/m0/s1
InChIKeyVXQPBNRYLWZLLJ-LURJTMIESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0[H]/N=C(\CSC)/NCCC[C@@H](C(=O)O)N
OpenEye OEToolkits 1.7.0CSCC(=N)NCCCC(C(=O)O)N
CACTVS 3.352CSCC(=N)NCCC[C@H](N)C(O)=O
ACDLabs 11.02O=C(O)C(N)CCCNC(=[N@H])CSC
CACTVS 3.352CSCC(=N)NCCC[CH](N)C(O)=O
FormulaC8 H17 N3 O2 S
NameN~5~-[2-(methylsulfanyl)ethanimidoyl]-L-ornithine
ChEMBL
DrugBank
ZINCZINC000044713351
PDB chain3jt3 Chain A Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3jt3 Heme-coordinating inhibitors of neuronal nitric oxide synthase. Iron-thioether coordination is stabilized by hydrophobic contacts without increased inhibitor potency.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		Q478 P565 F584 S585 W587 Y588 E592 D597
Binding residue
(residue number reindexed from 1)		Q169 P256 F275 S276 W278 Y279 E283 D288
Annotation score2
Binding affinityMOAD: Ki=0.9uM
Enzymatic activity
Catalytic site (original residue number in PDB) C415 R418 W587 E592
Catalytic site (residue number reindexed from 1) C106 R109 W278 E283
Enzyme Commision number 1.14.13.39: nitric-oxide synthase (NADPH).
Gene Ontology
Molecular Function
GO:0004517 nitric-oxide synthase activity
Biological Process
GO:0006809 nitric oxide biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3jt3, PDBe:3jt3, PDBj:3jt3
PDBsum3jt3
PubMed20014790
UniProtP29476|NOS1_RAT Nitric oxide synthase 1 (Gene Name=Nos1)

[Back to BioLiP]