Structure of PDB 3jb6 Chain A Binding Site BS02

Receptor Information
>3jb6 Chain A (length=1196) Species: 110829 (Bombyx mori cypovirus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKLHNTIFSETRKFTRESFKEIEHLTARLANDRVARHDFLFNTSIVLISD
YSGEDSNGNQLQATITIPNEIINPKEYDPSDYPLAEDESFFKQGHKYDYL
VTFRAGSLTNTYEPKTKMYKLHAALDKLMHVKQRKSRFADLWRELCAVIA
SLDVWYQTTNYPLRTYVKLLFHKGDEFPFYESPSQDRIIFNDKSVASILP
TFVYTCCQVGTAIMSGILTHVESIVAMNHFLHCAKDSYIDEKLKIKGIGR
SWYQEALHNVCQATVPVWSQFNEVIGHRTKSTSEPHFVSSTFISLRAKRA
ELLYPEFNAYINRAIQLSKTQNDVANYYAACRAMTNDGTFLATLTELSLD
AAVFPRIEQHLVTRPAVLMSNTRHESLKQKYTNGVGSIAQSYLSSFTDEI
AKRVNGRHHDEAWLNFLTTSRIVMQAVFAREYRTPERIFKSLKAPIKLVE
RQQSDRRQRAISGLDNDRLFLSFMPYTIGKQIYELNDNAAQGKQAGNAFD
IGEMLYWTSQRNVLLSSIDVAGMDASVTTNTKDIYNTFVLDVASKCTVPR
FGPYYAKNMEVFEAGNRQSQVRYVNAAWQACALEAANSQTSTSYESEIFG
QVKNAEGTYPSGRADTSTHHTVLLQGLVRGNELKRASDGKNSCLATIKIL
GDDIMEIFQGSESDTYDHAVSNASILNESGFATTAELSQNSIVLLQQLVV
NGTFWGFADRISLWTREDTKDIGRLNLAMMELNALIDDLVFRVRRPEGLK
MLGFFCGAICLRRFTLSVDNKLYDSTYNNLSKYMTLTKYDKNPDSDSTLM
SLILPLAWLFMPRGGEYPAYPFERRDGTFTEDESMFTARGAYKRRLLYDV
SNIGEMIQQNSMALDDDLLHEYGFTGALLLIDLNILDLIDEVKKEDISPV
KVSELATSLEQLGKLGEREKSRRAASDLKIRGHALSNDIVYGYGLQEKIQ
KSAMATKETTVQSKRVSSRLHDVIVAKTRDYKISTIPADALHLHEFEVED
VTVDLLPHAKHTSYSSLAYNMSFGSDGWFAFALLGGLDRSANLLRLDVAS
IRGNYHKFSYDDPVFKQGYKIYKSDATLLNDFFTAISAGPKEQGILLRAF
AYYSLYGNVEYHYVLSPRQLFFLSDNPVSAERLVRIPPKYYVSTQCRALY
NIFSYLHILRSIANNRGKRLKMVLHPGLIAYVRGTSQGAILPEADN
Ligand information
>3jb6 Chain D (length=16) Species: 110829 (Bombyx mori cypovirus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
PTVVQSRTDVFNEQFA
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jb6 In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		D1032 L1033 A1037 K1038 F1051 G1052 S1053 D1054 W1056 I1190 A1191 N1193 R1194
Binding residue
(residue number reindexed from 1)		D1004 L1005 A1009 K1010 F1023 G1024 S1025 D1026 W1028 I1162 A1163 N1165 R1166
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003968 RNA-dependent RNA polymerase activity
Biological Process
GO:0001172 RNA-templated transcription
GO:0019079 viral genome replication

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3jb6, PDBe:3jb6, PDBj:3jb6
PDBsum3jb6
PubMed26503045
UniProtD0EZK6

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