Structure of PDB 3ieo Chain A Binding Site BS02

Receptor Information
>3ieo Chain A (length=256) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQ
ATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQ
GSEHTVDKKKYAAELHLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVGSAK
PGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPESLDYWTYPGSLTTPPLL
ECVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNR
QIKASF
Ligand information
Ligand IDAMJ
InChIInChI=1S/C13H18N2O3/c1-10(16)15-12(9-18-2)13(17)14-8-11-6-4-3-5-7-11/h3-7,12H,8-9H2,1-2H3,(H,14,17)(H,15,16)/t12-/m0/s1
InChIKeyVPPJLAIAVCUEMN-LBPRGKRZSA-N
SMILES
SoftwareSMILES
ACDLabs 11.02O=C(NC(C(=O)NCc1ccccc1)COC)C
OpenEye OEToolkits 1.7.0CC(=O)NC(COC)C(=O)NCc1ccccc1
CACTVS 3.352COC[C@H](NC(C)=O)C(=O)NCc1ccccc1
CACTVS 3.352COC[CH](NC(C)=O)C(=O)NCc1ccccc1
OpenEye OEToolkits 1.7.0CC(=O)N[C@@H](COC)C(=O)NCc1ccccc1
FormulaC13 H18 N2 O3
NameN~2~-acetyl-N-benzyl-O-methyl-L-serinamide
ChEMBLCHEMBL58322
DrugBank
ZINCZINC000029562604
PDB chain3ieo Chain A Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3ieo The coumarin-binding site in carbonic anhydrase accommodates structurally diverse inhibitors: the antiepileptic lacosamide as an example and lead molecule for novel classes of carbonic anhydrase inhibitors
Resolution2.0 Å
Binding residue
(original residue number in PDB)		Q92 V121 F131
Binding residue
(residue number reindexed from 1)		Q89 V118 F127
Annotation score1
Binding affinityMOAD: Ki=331nM
PDBbind-CN: -logKd/Ki=6.48,Ki=331nM
Enzymatic activity
Catalytic site (original residue number in PDB) H64 H94 H96 E106 H119 T199
Catalytic site (residue number reindexed from 1) H61 H91 H93 E103 H116 T195
Enzyme Commision number 4.2.1.1: carbonic anhydrase.
4.2.1.69: cyanamide hydratase.
Gene Ontology
Molecular Function
GO:0004064 arylesterase activity
GO:0004089 carbonate dehydratase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016829 lyase activity
GO:0018820 cyanamide hydratase activity
GO:0046872 metal ion binding
Biological Process
GO:0002009 morphogenesis of an epithelium
GO:0006730 one-carbon metabolic process
GO:0015670 carbon dioxide transport
GO:0032230 positive regulation of synaptic transmission, GABAergic
GO:0032849 positive regulation of cellular pH reduction
GO:0038166 angiotensin-activated signaling pathway
GO:0044070 regulation of monoatomic anion transport
GO:0046903 secretion
GO:0051453 regulation of intracellular pH
GO:0070050 neuron cellular homeostasis
GO:2001150 positive regulation of dipeptide transmembrane transport
GO:2001225 regulation of chloride transport
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0043209 myelin sheath
GO:0045177 apical part of cell
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3ieo, PDBe:3ieo, PDBj:3ieo
PDBsum3ieo
PubMed20028100
UniProtP00918|CAH2_HUMAN Carbonic anhydrase 2 (Gene Name=CA2)

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