Structure of PDB 3hp1 Chain A Binding Site BS02

Receptor Information
>3hp1 Chain A (length=226) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQGGNVLQM
MYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSAR
YIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPET
CLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPIL
TLDVNEDFKDKYESLVEKVKEFLSTL
Ligand information
Ligand IDLLT
InChIInChI=1S/C10H14N2O5/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)/t6-,7+,8+/m1/s1
InChIKeyIQFYYKKMVGJFEH-CSMHCCOUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)O
CACTVS 3.341CC1=CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O
ACDLabs 10.04O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)CO
CACTVS 3.341CC1=CN([C@@H]2C[C@@H](O)[C@H](CO)O2)C(=O)NC1=O
OpenEye OEToolkits 1.5.0CC1=CN(C(=O)NC1=O)[C@@H]2C[C@H]([C@@H](O2)CO)O
FormulaC10 H14 N2 O5
NameL-deoxythymidine;
L-thymidine;
beta-L-thymidine;
L-dT;
2'-deoxy-L-thymidine;
1-(2-deoxy-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
ChEMBLCHEMBL374731
DrugBankDB01265
ZINCZINC000000002159
PDB chain3hp1 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3hp1 Extending Thymidine Kinase Activity to the Catalytic Repertoire of Human Deoxycytidine Kinase.
Resolution2.31 Å
Binding residue
(original residue number in PDB)
E53 L82 Y86 F96 Q97 R128 A133 F137 E197
Binding residue
(residue number reindexed from 1)
E34 L48 Y52 F62 Q63 R94 A99 F103 E163
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) E53 R128
Catalytic site (residue number reindexed from 1) E34 R94
Enzyme Commision number 2.7.1.113: deoxyguanosine kinase.
2.7.1.74: deoxycytidine kinase.
2.7.1.76: deoxyadenosine kinase.
Gene Ontology
Molecular Function
GO:0004136 deoxyadenosine kinase activity
GO:0004137 deoxycytidine kinase activity
GO:0004138 deoxyguanosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0019136 deoxynucleoside kinase activity
GO:0042803 protein homodimerization activity
GO:0043771 cytidine kinase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006220 pyrimidine nucleotide metabolic process
GO:0009224 CMP biosynthetic process
GO:0016310 phosphorylation
GO:0106383 dAMP salvage
GO:1901135 carbohydrate derivative metabolic process
GO:1901293 nucleoside phosphate biosynthetic process
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3hp1, PDBe:3hp1, PDBj:3hp1
PDBsum3hp1
PubMed19159229
UniProtP27707|DCK_HUMAN Deoxycytidine kinase (Gene Name=DCK)

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