Structure of PDB 3glq Chain A Binding Site BS02

Receptor Information
>3glq Chain A (length=462) Species: 320372 (Burkholderia pseudomallei 1710b) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSL
HMTIQTGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKG
ESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIA
RPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQME
KDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVV
AGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADK
ADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWEN
IKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQI
ELFTRGGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVS
KAGPFKPDHYRY
Ligand information
Ligand IDRAB
InChIInChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7+,10-/m1/s1
InChIKeyOIRDTQYFTABQOQ-UHTZMRCNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)CO)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O
ACDLabs 10.04n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)O)O)N
FormulaC10 H13 N5 O4
Name2-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL;
9-BETA-D-ARABINOFURANOSYL-ADENINE
ChEMBLCHEMBL1090
DrugBankDB00194
ZINCZINC000000970363
PDB chain3glq Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3glq Crystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei in complex with 9-beta-D-arabino-furansyl-adenine
Resolution2.3 Å
Binding residue
(original residue number in PDB)
L61 H62 T64 D139 T200 D233 H344 L385 H394 M399
Binding residue
(residue number reindexed from 1)
L50 H51 T53 D128 T189 D222 H333 L374 H383 M388
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) H62 S85 S90 D139 E199 N224 K229 D233 N234 C238 H344 H394 S402 Q406
Catalytic site (residue number reindexed from 1) H51 S74 S79 D128 E188 N213 K218 D222 N223 C227 H333 H383 S391 Q395
Enzyme Commision number 3.13.2.1: adenosylhomocysteinase.
Gene Ontology
Molecular Function
GO:0004013 adenosylhomocysteinase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006730 one-carbon metabolic process
GO:0033353 S-adenosylmethionine cycle
GO:0071269 L-homocysteine biosynthetic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3glq, PDBe:3glq, PDBj:3glq
PDBsum3glq
PubMed
UniProtQ3JY79|SAHH_BURP1 Adenosylhomocysteinase (Gene Name=ahcY)

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