Structure of PDB 3gfz Chain A Binding Site BS02

Receptor Information

>3gfz Chain A (length=393) Species: 272620 (Klebsiella pneumoniae subsp. pneumoniae MGH 78578) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQV
LEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLF
ETDGALEEILRFSTPVNDRMFRLLSAFIADGGRYCLPEPLQPSRWMMMPA
TAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRSPTGGSPVEMFAAIA
AEDRYRFDLESKAYAFALAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMD
SLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAG
YSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVV
AEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVAR

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

3gfz Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	3gfz Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.
Resolution	2.05 Å
Binding residue (original residue number in PDB)	E188 N239 E272 D302
Binding residue (residue number reindexed from 1)	E181 N232 E265 D295
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0009882	blue light photoreceptor activity
GO:0042802	identical protein binding
GO:0046872	metal ion binding
GO:0071949	FAD binding

	Biological Process
GO:0009785	blue light signaling pathway

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:3gfz, PDBe:3gfz, PDBj:3gfz
PDBsum	3gfz
PubMed	19536266
UniProt	A6T8V8

[Back to BioLiP]