Structure of PDB 3f7d Chain A Binding Site BS02

Receptor Information
>3f7d Chain A (length=238) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSDQPAPFSLLCRMADQT
FISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDS
ILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLK
FLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLS
LVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ
Ligand information
Ligand IDP42
InChIInChI=1S/C42H88NO8P/c1-6-8-10-12-14-16-18-20-21-23-24-26-28-30-32-34-41(44)48-38-40(39-50-52(46,47)49-37-36-43(3,4)5)51-42(45)35-33-31-29-27-25-22-19-17-15-13-11-9-7-2/h40-42,44-45H,6-39H2,1-5H3/t40-,41+,42+/m0/s1
InChIKeyLYKCEYRWVRQPBD-FEWNNGCESA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCCCCCCCCCCCC[C@H](O)OC[C@@H](CO[P]([O-])(=O)OCC[N+](C)(C)C)O[C@@H](O)CCCCCCCCCCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCCC[CH](O)OC[CH](CO[P]([O-])(=O)OCC[N+](C)(C)C)O[CH](O)CCCCCCCCCCCCCCC
OpenEye OEToolkits 1.7.5CCCCCCCCCCCCCCCCCC(O)OCC(COP(=O)([O-])OCC[N+](C)(C)C)OC(CCCCCCCCCCCCCCC)O
OpenEye OEToolkits 1.7.5CCCCCCCCCCCCCCCCC[C@H](O)OC[C@@H](COP(=O)([O-])OCC[N+](C)(C)C)O[C@H](CCCCCCCCCCCCCCC)O
ACDLabs 10.04[O-]P(=O)(OCC[N+](C)(C)C)OCC(OC(O)CCCCCCCCCCCCCCC)COC(O)CCCCCCCCCCCCCCCCC
FormulaC42 H88 N O8 P
Name(2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl]oxy}propyl 2-(trimethylammonio)ethyl phosphate;
1-Stearoyl-2-Palmitoyl-sn-Glycero-3-Phosphocholine
ChEMBL
DrugBank
ZINC
PDB chain3f7d Chain A Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3f7d Structure of SF-1 bound by different phospholipids: evidence for regulatory ligands.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
F263 L266 X267 S304 Q340 A341 G342 L345 A434 Y437 K441
Binding residue
(residue number reindexed from 1)
F40 L43 X44 S81 Q117 A118 G119 L122 A211 Y214 K218
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity

View graph for
Molecular Function
External links
PDB RCSB:3f7d, PDBe:3f7d, PDBj:3f7d
PDBsum3f7d
PubMed18988706
UniProtP33242|STF1_MOUSE Steroidogenic factor 1 (Gene Name=Nr5a1)

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