Structure of PDB 3cwd Chain A Binding Site BS02

Receptor Information
>3cwd Chain A (length=257) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMM
GEDSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKY
GVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEF
AVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQ
LKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQ
EIYKDLY
Ligand information
Ligand IDLNA
InChIInChI=1S/C18H31NO4/c1-2-3-4-5-8-11-14-17(19(22)23)15-12-9-6-7-10-13-16-18(20)21/h8,11,15H,2-7,9-10,12-14,16H2,1H3,(H,20,21)/b11-8-,17-15+
InChIKeyLELVHAQTWXTCLY-XYWKCAQWSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCC\C=C/CC(=C/CCCCCCCC(O)=O)\[N+]([O-])=O
OpenEye OEToolkits 1.5.0CCCCC\C=C/C/C(=C\CCCCCCCC(=O)O)/[N+](=O)[O-]
OpenEye OEToolkits 1.5.0CCCCCC=CCC(=CCCCCCCCC(=O)O)[N+](=O)[O-]
CACTVS 3.341CCCCCC=CCC(=CCCCCCCCC(O)=O)[N+]([O-])=O
ACDLabs 10.04[O-][N+](=O)/C(=C/CCCCCCCC(=O)O)C\C=C/CCCCC
FormulaC18 H31 N O4
Name(9E,12Z)-10-nitrooctadeca-9,12-dienoic acid
ChEMBL
DrugBank
ZINCZINC000004654921
PDB chain3cwd Chain A Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3cwd Molecular recognition of nitrated fatty acids by PPAR gamma.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		C285 Q286 S289 H449 Y473
Binding residue
(residue number reindexed from 1)		C65 Q66 S69 H229 Y253
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3cwd, PDBe:3cwd, PDBj:3cwd
PDBsum3cwd
PubMed18604218
UniProtP37231|PPARG_HUMAN Peroxisome proliferator-activated receptor gamma (Gene Name=PPARG)

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