Structure of PDB 3cns Chain A Binding Site BS02

Receptor Information
>3cns Chain A (length=492) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQ
GRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERG
RVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQF
LTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVV
QRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ
SVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC
WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERTSVTCWSQPLFFV
NLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDS
EDVIDGMRPANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMS
NGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKL
Ligand information
Ligand IDSP8
InChIInChI=1S/C15H25N3O/c1-13(9-12-17-11-6-5-10-16)18-15(19)14-7-3-2-4-8-14/h2-4,7-8,13,17H,5-6,9-12,16H2,1H3,(H,18,19)/t13-/m0/s1
InChIKeyUWDXTOVSVLCTLF-ZDUSSCGKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(CCNCCCCN)NC(=O)c1ccccc1
CACTVS 3.341C[CH](CCNCCCCN)NC(=O)c1ccccc1
ACDLabs 10.04O=C(NC(C)CCNCCCCN)c1ccccc1
CACTVS 3.341
OpenEye OEToolkits 1.5.0
C[C@@H](CCNCCCCN)NC(=O)c1ccccc1
FormulaC15 H25 N3 O
NameN-{(1S)-3-[(4-aminobutyl)amino]-1-methylpropyl}benzamide;
S-Bz-MeSpermidine
ChEMBL
DrugBank
ZINCZINC000024979095
PDB chain3cns Chain A Residue 518 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3cns Crystal structure of fms1 in complex with S-Bz-MeSpermidine
Resolution2.4 Å
Binding residue
(original residue number in PDB)
W65 H67 L173 W174 K312 L375 Y450
Binding residue
(residue number reindexed from 1)
W60 H62 L168 W169 K307 L364 Y433
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H67
Catalytic site (residue number reindexed from 1) H62
Enzyme Commision number 1.5.3.17: non-specific polyamine oxidase.
Gene Ontology
Molecular Function
GO:0003682 chromatin binding
GO:0016491 oxidoreductase activity
GO:0046592 polyamine oxidase activity
GO:0050660 flavin adenine dinucleotide binding
GO:0052897 N8-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity
GO:0052901 spermine oxidase activity
GO:0052903 N(1)-acetylpolyamine oxidase (3-acetamidopropanal-forming) activity
Biological Process
GO:0006338 chromatin remodeling
GO:0015940 pantothenate biosynthetic process
GO:0046208 spermine catabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3cns, PDBe:3cns, PDBj:3cns
PDBsum3cns
PubMed
UniProtP50264|FMS1_YEAST Polyamine oxidase FMS1 (Gene Name=FMS1)

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