Structure of PDB 3bqd Chain A Binding Site BS02

Receptor Information
>3bqd Chain A (length=253) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAA
VKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFA
PDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS
VPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDS
MHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLF
HQK
Ligand information
Ligand IDDAY
InChIInChI=1S/C30H36N2O4/c1-17-10-21-23-11-18(2)30(36,26(35)16-33)29(23,4)14-25(34)27(21)28(3)13-19-15-31-32(24(19)12-22(17)28)20-8-6-5-7-9-20/h5-10,12,15,18,21,23,25,27,33-34,36H,11,13-14,16H2,1-4H3/t18-,21+,23+,25+,27-,28+,29+,30+/m1/s1
InChIKeyFKAINCOIINXAOK-UFVJYOHBSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(CO)C4(O)C(C)CC5C6C=C(C3=Cc1c(cnn1c2ccccc2)CC3(C6C(O)CC45C)C)C
OpenEye OEToolkits 1.5.0CC1CC2C3C=C(C4=Cc5c(cnn5c6ccccc6)CC4(C3C(CC2(C1(C(=O)CO)O)C)O)C)C
OpenEye OEToolkits 1.5.0C[C@@H]1C[C@H]2[C@@H]3C=C(C4=Cc5c(cnn5c6ccccc6)C[C@@]4([C@H]3[C@H](C[C@@]2([C@]1(C(=O)CO)O)C)O)C)C
CACTVS 3.341C[CH]1C[CH]2[CH]3C=C(C)C4=Cc5n(ncc5C[C]4(C)[CH]3[CH](O)C[C]2(C)[C]1(O)C(=O)CO)c6ccccc6
CACTVS 3.341C[C@@H]1C[C@H]2[C@@H]3C=C(C)C4=Cc5n(ncc5C[C@]4(C)[C@H]3[C@@H](O)C[C@]2(C)[C@@]1(O)C(=O)CO)c6ccccc6
FormulaC30 H36 N2 O4
Name1-[(1R,2R,3aS,3bS,10aR,10bS,11S,12aS)-1,11-dihydroxy-2,5,10a,12a-tetramethyl-7-phenyl-1,2,3,3a,3b,7,10,10a,10b,11,12,12a-dodecahydrocyclopenta[5,6]naphtho[1,2-f]indazol-1-yl]-2-hydroxyethanone;
Deacylcortivazol;
11beta,17,21-Trihydroxy-6,16alpha-dimethyl-2'-phenyl-2'H-pregna-2,4,6-trieno(3,2-c)pyrazol-20-one;
2'H-Pregna-2,4,6-trieno(3,2-c)pyrazol-20-one;
11,17,21-trihydroxy-6,16-dimethyl-2'-phenyl-(11beta,16alpha)-(9CI);
6,16A-DIMETHYLPREGNA-4,6-DIENE-11B,17A,21-TRIOL-20-ONE-2'-PHENYL-(3,2-C)- PYRAZO
ChEMBL
DrugBank
ZINCZINC000005663749
PDB chain3bqd Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3bqd Doubling the size of the glucocorticoid receptor ligand binding pocket by deacylcortivazol.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
M560 L563 N564 L566 G567 Q570 M604 A605 A607 L608 R611 F623 Q642 Y735 T739
Binding residue
(residue number reindexed from 1)
M36 L39 N40 L42 G43 Q46 M80 A81 A83 L84 R87 F99 Q118 Y211 T215
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3bqd, PDBe:3bqd, PDBj:3bqd
PDBsum3bqd
PubMed18160712
UniProtP04150|GCR_HUMAN Glucocorticoid receptor (Gene Name=NR3C1)

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