Structure of PDB 3awo Chain A Binding Site BS02
Receptor Information
>3awo Chain A (length=368) Species:
9031
(Gallus gallus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MWLGALLDTLPTPALTIDRTTARRNAERMRERCRALGVRLRPHVKTHKTL
EGGLLATGGTRRGIAVSTLAEARFFADGGFDDILLAYPVPTARLEECAGL
ARRLDAFHVLLDRPEALASLRQRPLGHGKRWLVWLKLDCGRAGVRPTDPA
ALELAQAIANDAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLS
FVAALRQAGVPCPQASIGSTPSCSHPIPEMSQLTELHPGNYIFYDLQQTQ
LGSCQPQDVAIRVLTRVIGHYAHRGQLLVDCGWAALSLHGAGGPQGCAAI
DGHPELRLVGLTQEHGLLEHQMDFGRFPVGSVLALIPYHACATAAMHPVY
YVHEEGKVVALWHPVRGW
Ligand information
Ligand ID
DSN
InChI
InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m1/s1
InChIKey
MTCFGRXMJLQNBG-UWTATZPHSA-N
SMILES
Software
SMILES
CACTVS 3.341
N[CH](CO)C(O)=O
OpenEye OEToolkits 1.5.0
C([C@H](C(=O)O)N)O
CACTVS 3.341
N[C@H](CO)C(O)=O
OpenEye OEToolkits 1.5.0
C(C(C(=O)O)N)O
ACDLabs 10.04
O=C(O)C(N)CO
Formula
C3 H7 N O3
Name
D-SERINE
ChEMBL
CHEMBL285123
DrugBank
DB03929
ZINC
ZINC000000895342
PDB chain
3awo Chain A Residue 402 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3awo
Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney.
Resolution
2.65 Å
Binding residue
(original residue number in PDB)
K45 H176
Binding residue
(residue number reindexed from 1)
K45 H174
Annotation score
5
Enzymatic activity
Enzyme Commision number
4.3.1.18
: D-serine ammonia-lyase.
Gene Ontology
Molecular Function
GO:0008270
zinc ion binding
GO:0008721
D-serine ammonia-lyase activity
GO:0016829
lyase activity
GO:0030170
pyridoxal phosphate binding
GO:0046872
metal ion binding
Biological Process
GO:0036088
D-serine catabolic process
Cellular Component
GO:0005737
cytoplasm
GO:0030425
dendrite
GO:0042995
cell projection
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:3awo
,
PDBe:3awo
,
PDBj:3awo
PDBsum
3awo
PubMed
21676877
UniProt
A0A8V1ABE9
|DSD1_CHICK D-serine dehydratase (Gene Name=DSD)
[
Back to BioLiP
]