Structure of PDB 3anl Chain A Binding Site BS02

Receptor Information
>3anl Chain A (length=400) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFS
PRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAA
IVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVD
SEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLAT
MTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLI
HPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC
KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQ
IRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLASSA
Ligand information
Ligand IDSYC
InChIInChI=1S/C6H8NO3P/c8-11(9,10)5-6-3-1-2-4-7-6/h1-4H,5H2,(H2,8,9,10)
InChIKeyWVWCWWLEFNGDBC-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.370O[P](O)(=O)Cc1ccccn1
OpenEye OEToolkits 1.7.0c1ccnc(c1)CP(=O)(O)O
ACDLabs 12.01O=P(O)(O)Cc1ncccc1
FormulaC6 H8 N O3 P
Name(pyridin-2-ylmethyl)phosphonic acid
ChEMBLCHEMBL1615245
DrugBank
ZINCZINC000039275106
PDB chain3anl Chain A Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3anl Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
Resolution2.1 Å
Binding residue
(original residue number in PDB)		G184 S185 H208 W211 S221 N226 K227 S253
Binding residue
(residue number reindexed from 1)		G185 S186 H209 W212 S222 N227 K228 S254
Annotation score1
Binding affinityMOAD: ic50=4.6uM
BindingDB: IC50=4600nM
Enzymatic activity
Enzyme Commision number 1.1.1.267: 1-deoxy-D-xylulose-5-phosphate reductoisomerase.
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0030145 manganese ion binding
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0070402 NADPH binding
Biological Process
GO:0008299 isoprenoid biosynthetic process
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
Cellular Component
GO:1990065 Dxr protein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3anl, PDBe:3anl, PDBj:3anl
PDBsum3anl
PubMed21379374
UniProtP45568|DXR_ECOLI 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene Name=dxr)

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