Structure of PDB 2yri Chain A Binding Site BS02

Receptor Information
>2yri Chain A (length=352) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLLLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGE
GALVAALAGSGSLGMEAGLANLDRGPVLVLVNGAFSQRVAEMAALHGLDP
EVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALA
KEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAAS
LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLE
EGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDAD
RLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRAL
AL
Ligand information
Ligand IDPMP
InChIInChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
InChIKeyZMJGSOSNSPKHNH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1CN)C
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)CN)O
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(CN)c1O
FormulaC8 H13 N2 O5 P
Name4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE;
PYRIDOXAMINE-5'-PHOSPHATE
ChEMBLCHEMBL1235353
DrugBankDB02142
ZINCZINC000001532708
PDB chain2yri Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2yri hypothetical alanine aminotransferase (TTHA0173) from Thermus thermophilus HB8
Resolution2.05 Å
Binding residue
(original residue number in PDB)
Y229 T232
Binding residue
(residue number reindexed from 1)
Y229 T232
Annotation score1
Enzymatic activity
Enzyme Commision number 2.6.-.-
Gene Ontology
Molecular Function
GO:0004760 L-serine-pyruvate transaminase activity
GO:0008453 alanine-glyoxylate transaminase activity
GO:0008483 transaminase activity
Biological Process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate
Cellular Component
GO:0005777 peroxisome

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2yri, PDBe:2yri, PDBj:2yri
PDBsum2yri
PubMed
UniProtQ5SLX0

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