Structure of PDB 2ygt Chain A Binding Site BS02

Receptor Information
>2ygt Chain A (length=282) Species: 1502 (Clostridium perfringens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IRKEENGNVTIITQNNKQIRKYSSTDSATTKSNSKITVDASFVDDKFSSE
MTTIISLKGFIPSGRKIFALSKYRGVMRWPIKYMVDLKNNSLDSSVKIVD
SVPKNTISTKEVNNTISYSIGGGIDTSNKASLNANYAVSKSISYVQPDYN
TIQTNDTNSIASWNTEFAETRDGYNVNSWNIVYGNQMFMRSRYSGTSTTN
FTPDYQLSSLITGGFSPNFGVVLTAPNGTKKSQIEISLKREINSYHIAWD
TEWQGRNYPDSKIEETVKFELDWEKHTIRQIS
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain2ygt Chain A Residue 1294 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2ygt Structural Insights Into Clostridium Perfringens Delta Toxin Pore Formation.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		G203 W257
Binding residue
(residue number reindexed from 1)		G195 W249
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Biological Process
GO:0051715 cytolysis in another organism
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2ygt, PDBe:2ygt, PDBj:2ygt
PDBsum2ygt
PubMed23805259
UniProtB8QGZ7

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