Structure of PDB 2voa Chain A Binding Site BS02

Receptor Information
>2voa Chain A (length=257) Species: 2234 (Archaeoglobus fulgidus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHR
IGYHVVFSGSKGRNGVAIASLEEPEDVSFGLDSEPKDEDRLIRAKIAGID
VINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVA
PEPIDVHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTF
YDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPRLAEKPSDHLP
LVAVFDV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2voa Structure and Function of the Abasic Site Specificity Pocket of an Ap Endonuclease from Archaeoglobus Fulgidus.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
Q108 R204
Binding residue
(residue number reindexed from 1)
Q108 R204
Enzymatic activity
Catalytic site (original residue number in PDB) N8 N10 E35 Y105 D146 N148 D218 D247 H248
Catalytic site (residue number reindexed from 1) N8 N10 E35 Y105 D146 N148 D218 D247 H248
Enzyme Commision number 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003824 catalytic activity
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0008311 double-stranded DNA 3'-5' DNA exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:2voa, PDBe:2voa, PDBj:2voa
PDBsum2voa
PubMed19015049
UniProtO29675

[Back to BioLiP]