Structure of PDB 2uvf Chain A Binding Site BS02

Receptor Information

>2uvf Chain A (length=571) Species: 630 (Yersinia enterocolitica)

DAPQQLQVPTLAYDESSIVLVWKAPEDTRKIVDYQIFSAGKLLGKASDNN
DNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYA
DGSLSVASKPITAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKP
GCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSENPDDYPAGYRLYPY
STIERPASLINAIDPNNSKPGTFRNIRITGSGVIDGNGWLRAKTAEITDE
LGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDGMDLKNAYGQRRSSLMT
LRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQTYDANNGDGIEF
GNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGH
GAIVTGSHTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNN
AMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGK
NPSIEIKGDTANKAWHRLVHVNNVQLNNVTPTAISDLRDSEFNKVTFTEL
RGDTPWHFSEVKNVKVDGKPV

Ligand information

• Ligand ID: ADA
• InChI: InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2+,3+,4-,6-/m0/s1
• InChIKey: AEMOLEFTQBMNLQ-BKBMJHBISA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C1(C(C(OC(C1O)O)C(=O)O)O)O
  CACTVS 3.341: O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O
  CACTVS 3.341: O[C@H]1O[C@@H]([C@H](O)[C@H](O)[C@H]1O)C(O)=O
  ACDLabs 10.04: O=C(O)C1OC(O)C(O)C(O)C1O
  OpenEye OEToolkits 1.5.0: [C@@H]1([C@H]([C@H](O[C@@H]([C@@H]1O)O)C(=O)O)O)O
• Formula: C6 H10 O7
• Name: alpha-D-galactopyranuronic acid;
  alpha-D-galacturonic acid;
  D-galacturonic acid;
  galacturonic acid;
  ALPHA D-GALACTURONIC ACID
• DrugBank: DB03511
• ZINC: ZINC000004228259
• PDB chain: 2uvf Chain C Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 2uvf The Structural Basis for Exopolygalacturonase Activity in a Family 28 Glycoside Hydrolase.
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): R240 H355 E384 N406 H443
• Binding residue (residue number reindexed from 1): R205 H320 E349 N371 H408
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0004650 polygalacturonase activity

Biological Process

• GO:0005975 carbohydrate metabolic process

External links

• PDB: RCSB:2uvf, PDBe:2uvf, PDBj:2uvf
• PDBsum: 2uvf
• PubMed: 17397864
• UniProt: O68975