Structure of PDB 2p8c Chain A Binding Site BS02

Receptor Information
>2p8c Chain A (length=369) Species: 226900 (Bacillus cereus ATCC 14579) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVA
DDHVTGESWESTFHTLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTAK
AAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAA
SMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSA
NTLTALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSR
EMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESS
VASSAGFHVAFSKKIITSVELTGPLKFTKDIGNLHYDVPFIRLNEKPGLG
IEINEDTLQELTVFQDIVR
Ligand information
Ligand IDSUG
InChIInChI=1S/C10H18N4O5/c11-10(12)13-5-1-2-6(9(18)19)14-7(15)3-4-8(16)17/h6H,1-5H2,(H,14,15)(H,16,17)(H,18,19)(H4,11,12,13)/t6-/m0/s1
InChIKeyUMOXFSXIFQOWTD-LURJTMIESA-N
SMILES
SoftwareSMILES
CACTVS 3.341NC(=N)NCCC[CH](NC(=O)CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.5.0C(C[C@@H](C(=O)O)NC(=O)CCC(=O)O)CNC(=N)N
OpenEye OEToolkits 1.5.0C(CC(C(=O)O)NC(=O)CCC(=O)O)CNC(=N)N
CACTVS 3.341NC(=N)NCCC[C@H](NC(=O)CCC(O)=O)C(O)=O
ACDLabs 10.04O=C(NC(C(=O)O)CCCNC(=[N@H])N)CCC(=O)O
FormulaC10 H18 N4 O5
NameN~2~-(3-CARBOXYPROPANOYL)-L-ARGININE;
N~2~-SUCCINYLARGININE
ChEMBL
DrugBankDB02501
ZINCZINC000001529628
PDB chain2p8c Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2p8c Prediction and assignment of function for a divergent N-succinyl amino acid racemase.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
F19 Y26 M29 D51 K163 D191 D243 K267 S295 M296 E320 L321 T322
Binding residue
(residue number reindexed from 1)
F19 Y26 M29 D51 K163 D191 D243 K267 S295 M296 E320 L321 T322
Annotation score4
Enzymatic activity
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0016853 isomerase activity
GO:0016854 racemase and epimerase activity
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives
GO:0036361 racemase activity, acting on amino acids and derivatives
GO:0046872 metal ion binding
Biological Process
GO:0006518 peptide metabolic process

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:2p8c, PDBe:2p8c, PDBj:2p8c
PDBsum2p8c
PubMed17603539
UniProtQ81IL5|NSAR_BACCR N-succinyl-L-Arg/Lys racemase (Gene Name=BC_0371)

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