Structure of PDB 2p0x Chain A Binding Site BS02
Receptor Information
>2p0x Chain A (length=64) [
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GSFRVKPCVVCKVAPRDWRVKNRHLRIYNMCKTCFNNSIKSGDDTYHGHV
DWLMYTDAKEFSST
Ligand information
Ligand ID
ATP
InChI
InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
Formula
C10 H16 N5 O13 P3
Name
ADENOSINE-5'-TRIPHOSPHATE
ChEMBL
CHEMBL14249
DrugBank
DB00171
ZINC
ZINC000004261765
PDB chain
2p0x Chain A Residue 1318 [
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Receptor-Ligand Complex Structure
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PDB
2p0x
Structure and Evolutionary Analysis of a Non-biological ATP-binding Protein
Resolution
N/A
Binding residue
(original residue number in PDB)
D17 R19 K21 R26 Y28 N29 M30 F35 H47 G48 H49
Binding residue
(residue number reindexed from 1)
D17 R19 K21 R26 Y28 N29 M30 F35 H47 G48 H49
Annotation score
4
Binding affinity
PDBbind-CN
: -logKd/Ki=6.31,Kd=494nM
External links
PDB
RCSB:2p0x
,
PDBe:2p0x
,
PDBj:2p0x
PDBsum
2p0x
PubMed
17583732
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