Structure of PDB 2p09 Chain A Binding Site BS02
Receptor Information
>2p09 Chain A (length=69) Species:
32644
(unidentified) [
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DDDDKKTNWLKRIYRVRPCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSI
DIGDDTYHGHVDWLMYADS
Ligand information
Ligand ID
ATP
InChI
InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
Formula
C10 H16 N5 O13 P3
Name
ADENOSINE-5'-TRIPHOSPHATE
ChEMBL
CHEMBL14249
DrugBank
DB00171
ZINC
ZINC000004261765
PDB chain
2p09 Chain A Residue 500 [
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Receptor-Ligand Complex Structure
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PDB
2p09
Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization.
Resolution
1.65 Å
Binding residue
(original residue number in PDB)
K34 R41 Y43 M45 F50 H62 G63 H64
Binding residue
(residue number reindexed from 1)
K30 R37 Y39 M41 F46 H58 G59 H60
Annotation score
4
Binding affinity
MOAD
: Kd=450nM
PDBbind-CN
: -logKd/Ki=6.35,Kd=450nM
External links
PDB
RCSB:2p09
,
PDBe:2p09
,
PDBj:2p09
PDBsum
2p09
PubMed
17520026
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