Structure of PDB 2myb Chain A Binding Site BS02

Receptor Information
>2myb Chain A (length=153) Species: 9755 (Physeter catodon) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLK
TEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIP
IKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELG
YQG
Ligand information
Ligand IDMNC
InChIInChI=1S/C2H3N/c1-3-2/h1H3
InChIKeyZRKSVHFXTRFQFL-UHFFFAOYSA-N
SMILES
SoftwareSMILES
isocyanide
CACTVS 3.341
OpenEye OEToolkits 1.5.0
C[N+]#[C-]
FormulaC2 H3 N
NameMETHYL ISOCYANIDE
ChEMBL
DrugBankDB04337
ZINC
PDB chain2myb Chain A Residue 155 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2myb Structure of Myoglobin-Ethyl Isocyanide: Histidine as a Swinging Door for Ligand Entry
Resolution1.9 Å
Binding residue
(original residue number in PDB)
F43 H64 V68
Binding residue
(residue number reindexed from 1)
F43 H64 V68
Annotation score1
Enzymatic activity
Enzyme Commision number 1.11.1.-
1.7.-.-
Gene Ontology
Molecular Function
GO:0004601 peroxidase activity
GO:0005344 oxygen carrier activity
GO:0016491 oxidoreductase activity
GO:0019825 oxygen binding
GO:0020037 heme binding
GO:0046872 metal ion binding
GO:0098809 nitrite reductase activity
Biological Process
GO:0015671 oxygen transport
GO:0019430 removal of superoxide radicals
Cellular Component
GO:0005737 cytoplasm
GO:0016528 sarcoplasm
GO:0070062 extracellular exosome

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Biological Process

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Cellular Component
External links
PDB RCSB:2myb, PDBe:2myb, PDBj:2myb
PDBsum2myb
PubMed
UniProtP02185|MYG_PHYMC Myoglobin (Gene Name=MB)

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