Structure of PDB 1yfj Chain A Binding Site BS02
Receptor Information
>1yfj Chain A (length=259) Species:
10665
(Tequatrovirus T4) [
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MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLAND
IQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDP
LLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKI
IFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSL
NDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKN
GTDEVYIFN
Ligand information
>1yfj Chain 2 (length=15) [
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tcacaggatcctgtg
Receptor-Ligand Complex Structure
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PDB
1yfj
Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase.
Resolution
2.69 Å
Binding residue
(original residue number in PDB)
F111 P126
Binding residue
(residue number reindexed from 1)
F111 P126
Enzymatic activity
Enzyme Commision number
2.1.1.72
: site-specific DNA-methyltransferase (adenine-specific).
Gene Ontology
Molecular Function
GO:0003676
nucleic acid binding
GO:0003677
DNA binding
GO:0008168
methyltransferase activity
GO:0009007
site-specific DNA-methyltransferase (adenine-specific) activity
GO:0009008
DNA-methyltransferase activity
GO:0043565
sequence-specific DNA binding
GO:1904047
S-adenosyl-L-methionine binding
Biological Process
GO:0006260
DNA replication
GO:0006298
mismatch repair
GO:0009307
DNA restriction-modification system
GO:0019049
virus-mediated perturbation of host defense response
GO:0032259
methylation
GO:0052170
symbiont-mediated suppression of host innate immune response
GO:0099018
symbiont-mediated evasion of host restriction-modification system
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Molecular Function
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Biological Process
External links
PDB
RCSB:1yfj
,
PDBe:1yfj
,
PDBj:1yfj
PDBsum
1yfj
PubMed
15882618
UniProt
P04392
|DMA_BPT4 DNA adenine methylase (Gene Name=DAM)
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