Structure of PDB 1u0l Chain A Binding Site BS02

Receptor Information
>1u0l Chain A (length=278) Species: 2336 (Thermotoga maritima) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LRRRGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYT
PDETGSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL
VLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGM
GIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRTTTTAQLLKFDF
GGYVVDTPGFANLEINDIEPEELKHYFKEFGDKQCFFSDCNHVDEPECGV
KEAVENGEIAESRYENYVKMFYELLGRR
Ligand information
Ligand IDGDP
InChIInChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKeyQGWNDRXFNXRZMB-UUOKFMHZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
OpenEye OEToolkits 1.7.6c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
FormulaC10 H15 N5 O11 P2
NameGUANOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL384759
DrugBankDB04315
ZINCZINC000008215481
PDB chain1u0l Chain A Residue 299 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1u0l Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain
Resolution2.8 Å
Binding residue
(original residue number in PDB)		N117 K118 D120 S147 A148 K149 G173 V174 G175 K176 S177 S178
Binding residue
(residue number reindexed from 1)		N115 K116 D118 S145 A146 K147 G171 V172 G173 K174 S175 S176
Annotation score4
Enzymatic activity
Enzyme Commision number 3.6.1.-
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0016787 hydrolase activity
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0042254 ribosome biogenesis
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1u0l, PDBe:1u0l, PDBj:1u0l
PDBsum1u0l
PubMed15331784
UniProtQ9X242|RSGA_THEMA Small ribosomal subunit biogenesis GTPase RsgA (Gene Name=rsgA)

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