Structure of PDB 1s85 Chain A Binding Site BS02
Receptor Information
>1s85 Chain A (length=223) Species:
9823
(Sus scrofa) [
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IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRL
GEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRV
ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS
SYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQK
NKPGVYTKVCNYVNWIQQTIAAN
Ligand information
Ligand ID
SBZ
InChI
InChI=1S/C10H13BN2O3/c12-10(13)9-3-1-8(2-4-9)7-16-11-14-5-6-15-11/h1-4H,5-7H2,(H3,12,13)/p+1
InChIKey
XCLFQXCQQHVLJQ-UHFFFAOYSA-O
SMILES
Software
SMILES
ACDLabs 10.04
O(B1OCCO1)Cc2ccc(C(=[NH2+])\N)cc2
CACTVS 3.341
NC(=[NH2+])c1ccc(COB2OCCO2)cc1
OpenEye OEToolkits 1.5.0
B1(OCCO1)OCc2ccc(cc2)C(=[NH2+])N
Formula
C10 H14 B N2 O3
Name
[4-(1,3,2-DIOXABOROLAN-2-YLOXY)METHYL]BENZAMIDINE
ChEMBL
DrugBank
DB04109
ZINC
PDB chain
1s85 Chain A Residue 800 [
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Receptor-Ligand Complex Structure
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PDB
1s85
X-ray and NMR characterization of covalent complexes of trypsin, borate, and alcohols.
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
H57 D189 S190 C191 Q192 G193 S195 V213 W215 G216 G219
Binding residue
(residue number reindexed from 1)
H40 D171 S172 C173 Q174 G175 S177 V191 W193 G194 G196
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
H57 D102 Q192 G193 D194 S195 G196
Catalytic site (residue number reindexed from 1)
H40 D84 Q174 G175 D176 S177 G178
Enzyme Commision number
3.4.21.4
: trypsin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
GO:0008236
serine-type peptidase activity
GO:0046872
metal ion binding
Biological Process
GO:0006508
proteolysis
GO:0007586
digestion
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1s85
,
PDBe:1s85
,
PDBj:1s85
PDBsum
1s85
PubMed
15005618
UniProt
P00761
|TRYP_PIG Trypsin
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