Structure of PDB 1pd1 Chain A Binding Site BS02

Receptor Information
>1pd1 Chain A (length=735) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYI
RSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCR
RCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQPKSRYDRNEIKCAV
MEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP
NHDERTRISILCVDNAIHYFKIPLDSENINMMDIADLEEPNSMVVSLKAC
RQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTL
PNLGIGKLQRDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT
AGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMS
RFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLSL
NNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLD
DARVLINKSVQDILATYKKEIVAGGAPLRLCANLRMFPLLMHSLTKHMAF
RSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVGTI
VLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIF
DIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGAAREV
ATLRLWASSTLVEDKILNNESYREFLQIMKARISK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1pd1 Chain A Residue 950 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1pd1 SNARE selectivity of the COPII coat.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		C231 C253 C256
Binding residue
(residue number reindexed from 1)		C99 C121 C124
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
Biological Process
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
Cellular Component
GO:0030127 COPII vesicle coat

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1pd1, PDBe:1pd1, PDBj:1pd1
PDBsum1pd1
PubMed12941276
UniProtP40482|SEC24_YEAST Protein transport protein SEC24 (Gene Name=SEC24)

[Back to BioLiP]