Structure of PDB 1nmo Chain A Binding Site BS02
Receptor Information
>1nmo Chain A (length=247) Species:
562
(Escherichia coli) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLD
EAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPL
DAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARL
GRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTI
HSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
Ligand information
Ligand ID
FE
InChI
InChI=1S/Fe/q+3
InChIKey
VTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0
[Fe+3]
Formula
Fe
Name
FE (III) ION
ChEMBL
DrugBank
DB13949
ZINC
PDB chain
1nmo Chain A Residue 302 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1nmo
Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
H63 D101 E219
Binding residue
(residue number reindexed from 1)
H63 D101 E219
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0042802
identical protein binding
GO:0046872
metal ion binding
Biological Process
GO:0006281
DNA repair
GO:0010212
response to ionizing radiation
GO:0034214
protein hexamerization
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0060187
cell pole
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1nmo
,
PDBe:1nmo
,
PDBj:1nmo
PDBsum
1nmo
PubMed
14519207
UniProt
P0AFP6
|GCH1L_ECOLI GTP cyclohydrolase 1 type 2 homolog (Gene Name=ybgI)
[
Back to BioLiP
]