Structure of PDB 1m2o Chain A Binding Site BS02

Receptor Information
>1m2o Chain A (length=718) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPY
NPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNENMPLE
LQSTTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPN
ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTV
TPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIA
SLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHA
QHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVL
LLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIG
HASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTHLAY
TQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIA
VHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQF
TYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMED
DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYAD
FKALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSTIVLT
DDVSLQNFMTHLQQVAVS
Ligand information
Ligand IDGNP
InChIInChI=1S/C10H17N6O13P3/c11-10-13-7-4(8(19)14-10)12-2-16(7)9-6(18)5(17)3(28-9)1-27-32(25,26)29-31(23,24)15-30(20,21)22/h2-3,5-6,9,17-18H,1H2,(H,25,26)(H3,11,13,14,19)(H4,15,20,21,22,23,24)/t3-,5-,6-,9-/m1/s1
InChIKeyUQABYHGXWYXDTK-UUOKFMHZSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
OpenEye OEToolkits 1.5.0c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O
FormulaC10 H17 N6 O13 P3
NamePHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
ChEMBLCHEMBL1233085
DrugBankDB02082
ZINCZINC000037868676
PDB chain1m2o Chain B Residue 5200 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1m2o Structure of the Sec23/24-Sar1 pre-budding complex of the COPII vesicle coat
Resolution2.5 Å
Binding residue
(original residue number in PDB)		R722 L746
Binding residue
(residue number reindexed from 1)		R686 L699
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0003400 regulation of COPII vesicle coating
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0016236 macroautophagy
GO:0061709 reticulophagy
GO:0070863 positive regulation of protein exit from endoplasmic reticulum
GO:0090110 COPII-coated vesicle cargo loading
GO:0090114 COPII-coated vesicle budding
GO:1902953 positive regulation of ER to Golgi vesicle-mediated transport
Cellular Component
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0012507 ER to Golgi transport vesicle membrane
GO:0016020 membrane
GO:0030127 COPII vesicle coat
GO:0031410 cytoplasmic vesicle
GO:0070971 endoplasmic reticulum exit site

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1m2o, PDBe:1m2o, PDBj:1m2o
PDBsum1m2o
PubMed12239560
UniProtP15303|SEC23_YEAST Protein transport protein SEC23 (Gene Name=SEC23)

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