Structure of PDB 1krm Chain A Binding Site BS02

Receptor Information
>1krm Chain A (length=349) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TPAFDKPKVELHVHLDGAIKPETILYYGKRRGIALPADTPEELLNIIGMD
KPLTLPDFLAKFDYYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYS
PHLLANSKVEPIPWNQAEGDLTPDEVVSLVNQGLQEGERDFGVKVRSILC
CMRHQPSWSSEVVELCKKYREQTVVAIDLAGDETIEGSSLFPGHVQAYAE
AVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLR
QENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKST
LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEDEKKELLDLLYKAYR
Ligand information
Ligand IDPRH
InChIInChI=1S/C10H14N4O5/c15-1-4-6(16)7(17)10(19-4)14-3-13-5-8(14)11-2-12-9(5)18/h2-4,6-7,9-10,15-18H,1H2,(H,11,12)/p+1/t4-,6-,7-,9+,10-/m1/s1
InChIKeyWGRXVKRHIMUTPD-YOHZANMFSA-O
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1[nH+]c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=CN[C@H]2O
CACTVS 3.341OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c[nH+]c3[C@H](O)NC=Nc23
ACDLabs 10.04OC1c2[nH+]cn(c2N=CN1)C3OC(C(O)C3O)CO
OpenEye OEToolkits 1.5.0c1[nH+]c2c(n1C3C(C(C(O3)CO)O)O)N=CNC2O
CACTVS 3.341OC[CH]1O[CH]([CH](O)[CH]1O)n2c[nH+]c3[CH](O)NC=Nc23
FormulaC10 H15 N4 O5
Name6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE
ChEMBL
DrugBankDB03015
ZINC
PDB chain1krm Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1krm Structure of bovine adenosine deaminase complexed with 6-hydroxy-1,6-dihydropurine riboside.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		H14 D16 L59 H211 E214 H235 D292 D293
Binding residue
(residue number reindexed from 1)		H14 D16 L59 H211 E214 H235 D292 D293
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) H12 H14 H211 E214 H235 D292
Catalytic site (residue number reindexed from 1) H12 H14 H211 E214 H235 D292
Enzyme Commision number 3.5.4.4: adenosine deaminase.
Gene Ontology
Molecular Function
GO:0004000 adenosine deaminase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0019239 deaminase activity
GO:0046872 metal ion binding
GO:0046936 2'-deoxyadenosine deaminase activity
Biological Process
GO:0006154 adenosine catabolic process
GO:0007155 cell adhesion
GO:0009117 nucleotide metabolic process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process
GO:0042110 T cell activation
GO:0043103 hypoxanthine salvage
GO:0046103 inosine biosynthetic process
GO:0060169 negative regulation of adenosine receptor signaling pathway
Cellular Component
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0031410 cytoplasmic vesicle
GO:0060205 cytoplasmic vesicle lumen
GO:0070161 anchoring junction

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1krm, PDBe:1krm, PDBj:1krm
PDBsum1krm
PubMed12554940
UniProtP56658|ADA_BOVIN Adenosine deaminase (Gene Name=ADA)

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