Structure of PDB 1jsz Chain A Binding Site BS02

Receptor Information
>1jsz Chain A (length=291) Species: 10245 (Vaccinia virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFL
SKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHD
PILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSPSTADLLSN
YALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSA
EMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQ
EYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
Ligand information
Ligand IDNDM
InChIInChI=1S/C7H14N5O/c1-11-3-12(2)5-4(11)6(13)10-7(8)9-5/h3,6-7,9-10,13H,8H2,1-2H3/q+1/t6-,7+/m0/s1
InChIKeyUCYXILDOFXGENE-NKWVEPMBSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04OC2c1[n+](cn(c1NC(N)N2)C)C
CACTVS 3.341Cn1c[n+](C)c2[CH](O)N[CH](N)Nc12
CACTVS 3.341Cn1c[n+](C)c2[C@H](O)N[C@H](N)Nc12
OpenEye OEToolkits 1.5.0Cn1c[n+](c2c1NC(NC2O)N)C
FormulaC7 H14 N5 O
Name7,9-DIMETHYLGUANINE
ChEMBL
DrugBankDB01978
ZINCZINC000095921273
PDB chain1jsz Chain A Residue 600 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1jsz The "cap-binding slot" of an mRNA cap-binding protein: quantitative effects of aromatic side chain choice in the double-stacking sandwich with cap.
Resolution1.93 Å
Binding residue
(original residue number in PDB)		Y22 F180 D182 E233
Binding residue
(residue number reindexed from 1)		Y22 F174 D176 E227
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.57: methyltransferase cap1.
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003746 translation elongation factor activity
GO:0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0008168 methyltransferase activity
Biological Process
GO:0006370 7-methylguanosine mRNA capping
GO:0006412 translation
GO:0006414 translational elongation
GO:0031440 regulation of mRNA 3'-end processing
GO:0032259 methylation
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1jsz, PDBe:1jsz, PDBj:1jsz
PDBsum1jsz
PubMed12056899
UniProtP07617|MCE_VACCW Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (Gene Name=OPG102)

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