Structure of PDB 1jh7 Chain A Binding Site BS02

Receptor Information
>1jh7 Chain A (length=185) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAY
LTADEAKKMFESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEA
GEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLS
FRLNRLALCKTDTEDKTLETWETVAVCNLNPGSHH
Ligand information
Ligand IDUVC
InChIInChI=1S/C9H10N2O6.2H2O.O.V/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16;;;;/h1-2,4,6-8,12H,3H2,(H,10,13,16);2*1H2;;/q-2;;;;+4/p-2/t4-,6-,7-,8-;;;;/m1..../s1
InChIKeyJSPAHXDHRUTBDP-ODQFIEKDSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)C2C3C(C(O2)CO)O[V](=O)(O3)(O)O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@H](O2)CO)O[V](=O)(O3)(O)O
CACTVS 3.341OC[CH]1O[CH]([CH]2O[V](O)(O)(=O)O[CH]12)N3C=CC(=O)NC3=O
CACTVS 3.341OC[C@H]1O[C@H]([C@@H]2O[V](O)(O)(=O)O[C@H]12)N3C=CC(=O)NC3=O
ACDLabs 10.04O=[V]1(OC2C(OC(C2O1)CO)N3C=CC(=O)NC3=O)(O)O
FormulaC9 H12 N2 O9 V
NameURIDINE-2',3'-VANADATE
ChEMBL
DrugBank
ZINC
PDB chain1jh7 Chain A Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1jh7 Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
G36 P37 R38 F39
Binding residue
(residue number reindexed from 1)
G36 P37 R38 F39
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) H42 T44 M117 H119 S121 Y124
Catalytic site (residue number reindexed from 1) H42 T44 M117 H119 S121 Y124
Enzyme Commision number 3.1.4.37: 2',3'-cyclic-nucleotide 3'-phosphodiesterase.
Gene Ontology
Molecular Function
GO:0004112 cyclic-nucleotide phosphodiesterase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1jh7, PDBe:1jh7, PDBj:1jh7
PDBsum1jh7
PubMed11694509
UniProtO04147|CPD_ARATH Cyclic phosphodiesterase (Gene Name=At4g18930)

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