Structure of PDB 1h1o Chain A Binding Site BS02
Receptor Information
>1h1o Chain A (length=172) Species:
920
(Acidithiobacillus ferrooxidans) [
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VSSDCMVCHGMTGRDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGE
IYMWPVAQALDSAKITALADYFNAQKPPMQSSGIKHAGAKEGKAIFNQGV
TNEQIPACMECHGSDGQGAGPFPRLAGQRYGYIIQQLTYFHNGTRVNTLM
NQIAKNITVAQMKDVAAYLSSL
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
1h1o Chain A Residue 1185 [
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Receptor-Ligand Complex Structure
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PDB
1h1o
The Structure of Acidithiobacillus Ferrooxidans C(4)-Cytochrome. A Model for Complex-Induced Electron Transfer Tuning
Resolution
2.13 Å
Binding residue
(original residue number in PDB)
D15 C16 C19 H20 P33 Y42 L47 Y50 R55 D57 N59 G60 Y63 M64 V67 L79 Y143 Q147
Binding residue
(residue number reindexed from 1)
D4 C5 C8 H9 P22 Y31 L36 Y39 R44 D46 N48 G49 Y52 M53 V56 L68 Y132 Q136
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005506
iron ion binding
GO:0009055
electron transfer activity
GO:0020037
heme binding
GO:0046872
metal ion binding
Cellular Component
GO:0042597
periplasmic space
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Molecular Function
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Cellular Component
External links
PDB
RCSB:1h1o
,
PDBe:1h1o
,
PDBj:1h1o
PDBsum
1h1o
PubMed
12737820
UniProt
P74917
|CY552_ACIFI Cytochrome c-552 (Gene Name=cyc1)
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