Structure of PDB 1gfo Chain A Binding Site BS02
Receptor Information
>1gfo Chain A (length=340) Species:
562
(Escherichia coli) [
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AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQ
INSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGR
NYGVVYDALGYTDMLPEFGGDTAYSDDFFVGPVGGVATYRNSNFFGLVDG
LNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQ
EAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGF
ANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGAT
YYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Ligand information
Ligand ID
C8E
InChI
InChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3
InChIKey
FEOZZFHAVXYAMB-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O(CCCCCCCC)CCOCCOCCOCCO
CACTVS 3.341
OpenEye OEToolkits 1.5.0
CCCCCCCCOCCOCCOCCOCCO
Formula
C16 H34 O5
Name
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
ChEMBL
DrugBank
DB04233
ZINC
ZINC000014881140
PDB chain
1gfo Chain A Residue 346 [
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Receptor-Ligand Complex Structure
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PDB
1gfo
Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
Resolution
3.3 Å
Binding residue
(original residue number in PDB)
I178 Y191
Binding residue
(residue number reindexed from 1)
I178 Y191
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0001530
lipopolysaccharide binding
GO:0005216
monoatomic ion channel activity
GO:0005515
protein binding
GO:0008289
lipid binding
GO:0015288
porin activity
GO:0042802
identical protein binding
GO:0042912
colicin transmembrane transporter activity
GO:0097718
disordered domain specific binding
Biological Process
GO:0006811
monoatomic ion transport
GO:0015031
protein transport
GO:0034220
monoatomic ion transmembrane transport
GO:0043213
bacteriocin transport
GO:0070207
protein homotrimerization
Cellular Component
GO:0009279
cell outer membrane
GO:0016020
membrane
GO:0034702
monoatomic ion channel complex
GO:0046930
pore complex
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1gfo
,
PDBe:1gfo
,
PDBj:1gfo
PDBsum
1gfo
PubMed
8702816
UniProt
P02931
|OMPF_ECOLI Outer membrane porin F (Gene Name=ompF)
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