Structure of PDB 1f8v Chain A Binding Site BS02

Receptor Information
>1f8v Chain A (length=355) Species: 103782 (Pariacoto virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRRNKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLTDAG
LAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVFTPNTDTYI
VVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQNGLPAVNNY
SKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPG
VFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDFEWCDFV
RSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYKISTPTGAV
NTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKMRFPVAV
SSREN
Ligand information
>1f8v Chain D (length=25) Species: 103782 (Pariacoto virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SKFWEGVLRVLNQISGTHQLTGMYM
Receptor-Ligand Complex Structure
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PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R48 K61 F64 A65 D68 P339 E343 C344 L348 R351 N361
Binding residue
(residue number reindexed from 1)		R42 K55 F58 A59 D62 P333 E337 C338 L342 R345 N355
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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