Structure of PDB 1avm Chain A Binding Site BS02

Receptor Information

>1avm Chain A (length=201) Species: 1752 (Propionibacterium freudenreichii subsp. shermanii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEAR
DKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAI
DEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKRINTLQFYDHQNNL
PAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNWDDVALRFSEARV
A

Ligand information

Ligand ID

AZI

InChI

InChI=1S/N3/c1-3-2/q-1

InChIKey

IVRMZWNICZWHMI-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 CACTVS 3.341 OpenEye OEToolkits 1.5.0	[N-]=[N+]=[N-]

Formula

Name

AZIDE ION

PDB chain

1avm Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1avm The Structure of the Azide Coordinated Superoxide Dismutase of P. Shermanii Investigated by X-Ray Structure Analysis, Exafs, Mossbauer-and Epr Spectroscopy
Resolution	1.55 Å
Binding residue (original residue number in PDB)	H27 H31 H32 Y35 H75 H165
Binding residue (residue number reindexed from 1)	H27 H31 H32 Y35 H75 H165
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.15.1.1: superoxide dismutase.

Gene Ontology

	Molecular Function
GO:0004784	superoxide dismutase activity
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006801	superoxide metabolic process
GO:0019430	removal of superoxide radicals

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Molecular Function

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Biological Process

External links

PDB	RCSB:1avm, PDBe:1avm, PDBj:1avm
PDBsum	1avm
PubMed
UniProt	P80293\|SODM_PROFR Superoxide dismutase [Mn/Fe] (Gene Name=sodA)

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