Structure of PDB 1aoq Chain A Binding Site BS02
Receptor Information
>1aoq Chain A (length=551) Species:
82367
(Paracoccus pantotrophus) [
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HKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTALSDAQYNEANKIYFERCA
GCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYASPAGMPNWGTSGELS
AEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLE
NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR
DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP
QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV
KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL
VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL
IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI
SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE
VWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDT
Y
Ligand information
Ligand ID
DHE
InChI
InChI=1S/C34H34N4O10.Fe/c1-15-17(5-7-27(39)40)21-10-22-18(6-8-28(41)42)16(2)20(36-22)11-25-33(3,13-29(43)44)32(48)24(38-25)12-26-34(4,14-30(45)46)31(47)23(37-26)9-19(15)35-21;/h9-12H,5-8,13-14H2,1-4H3,(H6,35,36,37,38,39,40,41,42,43,44,45,46,47,48);/q;+2/p-2/t33-,34-;/m1./s1
InChIKey
XLQCGNUTSJTZNF-YDXXJHAFSA-L
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.7
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=CC6=[N]7[Fe]3(N45)[N]8=C(C=C7C(C6=O)(C)CC(=O)O)C(=O)C(C8=C2)(C)CC(=O)O)C)CCC(=O)O
OpenEye OEToolkits 2.0.7
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=CC6=[N]7[Fe]3(N45)[N]8=C(C=C7[C@@](C6=O)(C)CC(=O)O)C(=O)[C@](C8=C2)(C)CC(=O)O)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N@]2C1=CC5=NC(=CC6=NC(=Cc4c(C)c3CCC(O)=O)[C@@](C)(CC(O)=O)C6=O)[C@@](C)(CC(O)=O)C5=O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N]2C1=CC5=NC(=CC6=NC(=Cc4c(C)c3CCC(O)=O)[C](C)(CC(O)=O)C6=O)[C](C)(CC(O)=O)C5=O
Formula
C34 H32 Fe N4 O10
Name
HEME D
ChEMBL
DrugBank
ZINC
PDB chain
1aoq Chain A Residue 602 [
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Receptor-Ligand Complex Structure
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PDB
1aoq
Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
Y25 P27 M106 W109 R174 H200 I201 R216 R243 S244 Y263 A301 A302 H345 R391 F444 W522 T554 F557
Binding residue
(residue number reindexed from 1)
Y9 P11 M90 W93 R158 H184 I185 R200 R227 S228 Y247 A285 A286 H329 R375 F428 W506 T538 F541
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
C65 C68 H69 M106 H345 H388
Catalytic site (residue number reindexed from 1)
C49 C52 H53 M90 H329 H372
Enzyme Commision number
1.7.2.1
: nitrite reductase (NO-forming).
1.7.99.1
: hydroxylamine reductase.
Gene Ontology
Molecular Function
GO:0009055
electron transfer activity
GO:0016491
oxidoreductase activity
GO:0020037
heme binding
GO:0046872
metal ion binding
GO:0050418
hydroxylamine reductase activity
GO:0050421
nitrite reductase (NO-forming) activity
Cellular Component
GO:0042597
periplasmic space
View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB
RCSB:1aoq
,
PDBe:1aoq
,
PDBj:1aoq
PDBsum
1aoq
PubMed
9311786
UniProt
P72181
|NIRS_PARPN Nitrite reductase (Gene Name=nirS)
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