Structure of PDB 7p48 Chain 6 Binding Site BS02

Receptor Information
>7p48 Chain 6 (length=510) Species: 42858 (Mammaliicoccus lentus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLFLFEEKPLEIENKQLIKRLSFHIEDHEHLALIGVNGIGKSTLLHHIHK
NELIDTAMMEQDLSKHDDIDVMDYVMSAYIIIEGNKLGLSSTHFEQKIGT
LSGGEQTKVSFLKVILSDAPLLLIDQPTNHMDKEMKVWLIKAFKSEQRAI
LFVSHDREFLNETPDAILELTKDGATRYSGHYDDYKNQKDIEIETEKLKY
EKEQKEQKAIEESIKKYKEWYQRAAQKASVRSPYAQKQLSKLAKRFKSKE
HQLNRKLEESKSDNPLEENKSFSIENNEFKSHYLVRFENVSFSYKSREIF
KDTYFEIKRNQTVIIEGKNGSGKSTLIQLILGNLLPMSGAVKKHPDLDIG
YFSQDFQNLNPNNSVLEEVMDIENMMITDARTILASFYFDKSRMNDKVRQ
LSMGEKCRLQFVKLYFSNPHILILDQPTNYFDISMQEKIIQLIQSFNGAV
IIVSHDEIFKDEIRDQVWKIENCKLIHENVSINTPIDAESMKDELKILEQ
YTDERNKETD
Ligand information
>7p48 Chain A (length=2661) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccgauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauaugugaauacauagcauaucagaaggcacacccggagaacugaaaca
ucuuaguacccggaggaagagaaagaaaauucgauucccuuaguagcggc
gagcgaaaugggaagagcccaaaccaacaagcuugcuuguugggguugua
ggacaggaguuacaaaggacgacauuagacgaaucaucuggaaagaugaa
ucaaagaagguaauaauccuguagucgaaaauguugucucucuuccugag
uacgacggagcacgugaaauuccgucggaaucugggaggaccaucuccua
aggcuaaauacucucuagugaccgauagugaaccaguaccgugagggaaa
ggugaaaagcaccccggaaggggagugaaauagaaccugaaaccgugugc
uuacaaguagucagagcccguuaaugggugauggcgugccuuuuguagaa
ugaaccggcgaguuacgauuugaugcaagguuaagcaguaaauguggagc
cguagcgaaagcgagucugaauagggcguuuaguauuuggucguagaccc
gaaaccaggugaucuacccuuggucagguugaaguucagguaacacugaa
uggaggaccgaaccgacuuacguugaaaagugagcggaugaacugagggu
agcggagaaauuccaaucgaaccuggagauagcugguucucuccgaaaua
gcuuuagggcuagccucaagugaugauuauuggagguagagcacuguuug
gauucagacaaacuccgaaugccaauuaauuuaacuugggagucagaaca
ugggugauaagguccguguucgaaagggaaacagcccagaccaccagcua
aggccccaaaauauauguuaaguggaaaaggauguggcacugcgccgaaa
auguaccggggcuaaacauauuaccgaagcuguggauuguccggacaaug
guaggagagcguucuaagggcguugaagcaugaucguaaggacaugugga
gcgcuuagaagugagaaugccggugugaguagcgaaagacgggugagaau
cccguccaccgauugacuaagguuuccagaggaaggcucguccgcucugg
guuagucggguccuaagcugaggccgacaggcguaggcgauggauaacag
guugauauuccuguaccaccuauaucgauggggggacgcaguaggauagg
cgaagcgugcgauuggauugcacgucuaagcaguaaggcugaguauuagg
caaauccgguacucgggcugagcugugauggggagaucgagucguugauu
ucacacugccgagaaaagccucuagauauaggugcccguaccgcaaaccg
acacagguagucaagaugagaauucuaaggugagcgagcgaacucucguu
aaggaacucggcaaaaugaccccguaacuucgggagaaggggugcucuuu
aggguuaacgcccagaagagccgcagugaauaggcccaagcgacuguuua
ucaaaaacacaggucucugcuaaaccguaaggugauguauaggggcugac
gccugcccggugcuggaagguuaagaggagugguuagcgcgaagcuacga
aucgaagccccaguaaacggcggccguaacuauaacgguccuaagguagc
gaaauuccuugucggguaaguuccgacccgcacgaaaggcguaacgauuu
gggcacugucucaacgagagacucggugaaaucauaguaccugugaagau
gcagguuacccgcgacaggacggaaagaccccguggagcuuuacuguagc
cugauauugaaauucguggcuuucuaacccgcaccacuuaucgugguggg
agacagugucaggcgggcaguuugacuggggcggucgccuccuaaaaggu
aacggaggcgcucaaagguucccucagaaugguuggaaaucauucauaga
guguaaaggcauaagggagcuugacugcgagaccuacaagucgagcaggg
ucgaaagacggacuuagugauccggugguuccgcauggaagggccaucgc
ucaacggauaaaagcuaccccggggauaacaggcuuaucucccccaagag
uucacaucgacggggagguuuggcaccucgaugucggcucaucgcauccu
ggggcuguagucggucccaaggguugggcuguucgcccauuaaagcggua
cgcgagcuggguucagaacgucgugagacaguucggucccuauccgucgu
gggcguaggaaauuugagaggagcuguccuuaaccgggauggacauaccu
cugguguaccaguugucgugccaacggcauagcuggguagcuaugugugg
acgggauaagugcugaaagcaucuaagcaugaagccccccucaagaugag
auuucccaacuucgguuauaagaucccucaaagaugaugagguuaauagg
uucgagguggaagcauggugacauguggagcugacgaauacuaaucgauc
gaagacuuaau
<<<<<<......<<<<<<<<<<<....{[[..[[<<<<<<<[[<<.....
.<<<<<<.[...((.>>>.....<<<<<<<..<<<))...].>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>.>>.>>.....<<<<......<<....
>>.......>>>>...........<<....>>..<<<<<......<<...
..>>.....>>>>>..(((....<<<<<<<<....>>>>>>>>......<
<<<..<<<<.......<<<<<<<<<<.<<<...<<<<<......>>>>>(
(......<<<.....))>>>...>>>...>>>>>>>>>>>>>>>>>>...
..<<<<<<<<.........>>>>>>>>......<<<<<..<<<<>>>>>.
.)))......]].>>>>>>>.]]...............<<....>>....
]].........<<<<....>>>>.............}....>>>>>>>>>
>>.......<<<<..<<<<......>>>>..>>>>...<.<........>
.>.<<<<<<....<<<<<<<.<<<<<..<<<...<<<.....>>>...>>
>...<<....>>..<<<<.....>>>>.....>>>>>.>>>>>>>..<<.
<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<......>>>>>
>.....>>>...<<<.<<<<<........>>>>>>>>....>>>>>>>>>
...<<<.....>>>......>>>>>>......>.>>..<<<<<<....<<
<<<....>>>>><<<<<<<<<...<<<<<<<<<.....<<<...<<<<<<
<..>>>>>>>..>>.>.....>>>>>.>>>>..>>>>>>>.>>..<<<<<
<<<<<......>>>>>>>>>>....<<<......>>>...<<<<.<<<..
.<<.(((.....<<<<<<...........<<..<<<<..>>>>.>>....
.......))).....>>>>>>..>>...>>>>>>><<<<<<..>>>>>>.
...>>>>>><.<<<<<<<.<<......<<<<<.<<....>>.>>>>>...
>>.>>>>>>>..>.....>>>>>><......<<....<<<<<<.......
>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>
....((<<<<.<<.<.<<<...<<<....>>>...>>>..>>>...<<<<
<........>>>>>))<<<<<<.<<<...<<<<....<<<<..<<<..<<
<<<.<<<<<<...(((...>>>>>><<..<<<<<..<<<.<<<<<<..<<
.....>>.>>>>>>..>>>..>>>>>...>>...<..>...>>>>>...>
>>...>>>>.........>>>>..>>>.>>>>>>>>>>..>>.....<<.
.....>>>>>>>.<<<.......>>>..>>>>..<<<<....<<<<<<<<
.<<...............<<<<<...............>>>>><<<<<<<
.<<<<....>>>>.>>>>>>>............<<<<<<<<<..<<<...
......>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<
<<<.<<<..<<<<<<<..<<<<..<<...<<<<<<.<..>..>>>>>>..
.>>..>>>>>>>>>..>>>>><<<<<<.......>>>>>>........<.
..........<<<<<<.....>>>>>>.....>....>>>>>..>>.>>>
>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<.......
.>>>>>..<<<<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<
<<<<<<<.<<<<.<<..>>.>>>>....<<.<<<<<<.....>>>>>>>>
.....>>>>>>>>>..>>>>>..<<<<.....>>>><<<<<<........
...>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....
<<.[.(((>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<
<<....>>>.>>)))]......<<<<<<<.((..>>>>..))>>>>>>>.
............>>>>..]]>>>>.......<<<<...<<<<<<...<<.
......>>...>>>>>>....>>>.>.......<<<<<.<<<<<<..<<<
<<<<<<......>>>>>>>..>>.<<<<<.....>>>>>.....>>>>>.
.>...>>>.>>....<<<<<<<....>>>.>>>>....]]..)))>>>>>
>>>....<<<<<<<...<<<<..<<<<<<<.....>>>>>>>.<<<<<..
.<<<<...<<<<<<<<<<<.)))>>>>>>..>>>>>...>>>>.>>>>>.
..<<<.<..<<<<<...........>>>>>...>>>>.>>>>.......>
>>>>>>.<<<....>>>....<<<<<<<<<.......>>>>>....<<<<
<<<<.<<<....<<<<<....>>>>>...>>>..>>>>>.>>>...>>>>
....>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7p48 Sal-type ABC-F proteins: intrinsic and common mediators of pleuromutilin resistance by target protection in staphylococci.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		H24 Q218 T225 K232 Y247 W250 Y251 S259 R261 P263 Y264 Q266 K267 Q268 S270 K271 K274 R275 H281 R285
Binding residue
(residue number reindexed from 1)		H24 Q188 T195 K202 Y217 W220 Y221 S229 R231 P233 Y234 Q236 K237 Q238 S240 K241 K244 R245 H251 R255
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 11:34:15 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7p48', asym_id = '6', bs = 'BS02', title = 'Sal-type ABC-F proteins: intrinsic and common me...resistance by target protection in staphylococci.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7p48', asym_id='6', bs='BS02', title='Sal-type ABC-F proteins: intrinsic and common me...resistance by target protection in staphylococci.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0005524,0016887', uniprot = '', pdbid = '7p48', asym_id = '6'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005524,0016887', uniprot='', pdbid='7p48', asym_id='6')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>