Structure of PDB 7abz Chain 6 Binding Site BS02

Receptor Information
>7abz Chain 6 (length=371) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGNTSHVEYDTP
TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG
RQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRG
SALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG
RGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGE
NVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPF
FKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGL
RFAIREGGRTVGAGVVAKVLS
Ligand information
>7abz Chain 4 (length=363) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<................<<<.<...........<<.........
.((..<<<<....))........>>>>.......................
......<.<<......................>>.>.....<...<<<..
<<<...((...>>>..>>>.......>.................))....
.............<<<.........................>>>......
<<...<...<<...(..(.>>....>..>>.............)..)...
............>>...........>>>.>.....<<<<.........>>
>>>>>>>>>....
Receptor-Ligand Complex Structure
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PDB7abz Structures of tmRNA and SmpB as they transit through the ribosome.
Resolution3.21 Å
Binding residue
(original residue number in PDB)		D86 Y87 F218 V226 E259 F261 R262 L277 R288 R318 H319 T320 F323 G325 Y326 R327 Q329 E378 G379 G380
Binding residue
(residue number reindexed from 1)		D64 Y65 F196 V204 E237 F239 R240 L255 R266 R296 H297 T298 F301 G303 Y304 R305 Q307 E356 G357 G358
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003746 translation elongation factor activity
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0097216 guanosine tetraphosphate binding
Biological Process
GO:0006412 translation
GO:0006414 translational elongation
GO:0046677 response to antibiotic
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0032045 guanyl-nucleotide exchange factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7abz, PDBe:7abz, PDBj:7abz
PDBsum7abz
PubMed34389707
UniProtP0CE48|EFTU2_ECOLI Elongation factor Tu 2 (Gene Name=tufB)

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