Structure of PDB 6lqu Chain 5C Binding Site BS02 |
| >6lqu Chain 5C (length=516) Species: 559292 (Saccharomyces cerevisiae S288C)
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KERENQNKFERSTYTNNQTKDKKLRAGLKKIDEQYKKAVSSAAATDYLLP
ESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKY
AKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQNEQYFAV
AQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHD
VSTGQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLV
KLLSARGPVNSIAIDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTP
GTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSMGGNPHRNTPY
MSHLFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNP
FETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQ
TTMDANNKAKTNSDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQK
QLDKEKNIRKRNHQIK |
|
| >6lqu Chain 5A (length=523)
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|
ugcgaaagcaguugaagacaaguggcuugucguucguuaaaauggccucg
ucaaacgguggagagagucgcuaggugaucgucagaucugccuagucucu
auacagcguguuuaauugacauggguugaugcguauugagagauacaauu
ugggaagaaauucccagaguguguuucuuuugcguuuaaccugaacaguc
ucaucgugggcaucuugcgauuccauuggugagcagcgaaggauuuggug
gauuacuagcuaauagcaaucuauuucaaagaauucaaacuugggggaau
gccuuguugaauagccggucgcaagacugugauucuucaaguguaaccuc
cucucaaaucagcgauaucaaacguaccaccgugaaacaccgggguaucu
guuugguggaaccugauuagaggaaacucaaagagugcuaugguauggug
acggagugcgcuggucaagaguguaaaagcuuuuugaacagagagcauuu
ccggcagcagagauuucagcugu |
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>..............<
<<<<<<<.<<...<<<<..<<<<<<<<<<<....>>>>.>>>>>>>>>>>
...>>.>>>......>>>>>..<<<<<..........<<<<<<<<<<.<<
<<<<<<....>>>>>>>.>>>>>>>>>>>........>>>>>.......<
<<<<<<<<<<...........>>>>>.>>>>>>.................
........<<<...>>>.........................<<<<<..<
<<<<<<..<<<<...<<<<<....>>>>>.>.>>>..>>>>.>>.>>>>>
>.....<<<<<<...<<<<<<<<<<<<<.<<<........>>>>>>>.>.
>>>>>>>>....>>>>>>................................
.<<<<.<<<.<<<.<<<<<<<<......>>>>.>>>>.>>>...>>>..>
>>><<<<<.<<<..>>>.>>>>> |
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| PDB | 6lqu Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states. |
| Resolution | 3.7 Å |
Binding residue
(original residue number in PDB) | K82 F84 K85 Q164 H179 I191 E192 T211 W213 K215 L224 E227 R229 K231 A232 G233 P264 R274 P316 H337 G356 S357 M358 G359 G360 R364 A374 K422 R425 P484 D485 K487 K493 N494 S495 R498 R502 K503 R512 R527 H531 |
Binding residue
(residue number reindexed from 1) | K64 F66 K67 Q146 H161 I173 E174 T193 W195 K197 L206 E209 R211 K213 A214 G215 P246 R256 P298 H319 G338 S339 M340 G341 G342 R346 A356 K404 R407 P466 D467 K469 K475 N476 S477 R480 R484 K485 R494 R509 H513 |
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| Enzyme Commision number |
? |
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Biological Process |
| GO:0000447 |
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000462 |
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000472 |
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000480 |
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0006364 |
rRNA processing |
| GO:0030490 |
maturation of SSU-rRNA |
| GO:0042254 |
ribosome biogenesis |
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