Structure of PDB 7d5t Chain 3D Binding Site BS02

Receptor Information
>7d5t Chain 3D (length=378) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIEYLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVS
FAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASSKKKNITLAISD
KNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQL
GLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWH
FPELAKLVPDNYTFAKLVLFIKDKASLNDDSLHDLAAGIAQRVIDNARIS
MGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIG
EVIGARLISHAGSLTNLSKQAASTVQILGAEKKNKGRISRYLANKCSMAS
RIDNYSEEPSNVFGSVLKKQVEQRLEFY
Ligand information
>7d5t Chain 5A (length=43) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaaacucaaagagugcuaucggagugcgcgagagcauuuccg
....................<<<<<<<<......>>>>.>>>>
Receptor-Ligand Complex Structure
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PDB7d5t Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
Resolution6.0 Å
Binding residue
(original residue number in PDB)		K46 K92
Binding residue
(residue number reindexed from 1)		K44 K90
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0030515 snoRNA binding
Biological Process
GO:0000154 rRNA modification
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7d5t, PDBe:7d5t, PDBj:7d5t
PDBsum7d5t
PubMed
UniProtQ12460|NOP56_YEAST Nucleolar protein 56 (Gene Name=NOP56)

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