Structure of PDB 6lqs Chain 3D Binding Site BS02

Receptor Information
>6lqs Chain 3D (length=378) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIEYLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVS
FAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASSKKKNITLAISD
KNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQL
GLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWH
FPELAKLVPDNYTFAKLVLFIKDKASLNDDSLHDLAAGIAQRVIDNARIS
MGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIG
EVIGARLISHAGSLTNLSKQAASTVQILGAEKKNKGRISRYLANKCSMAS
RIDNYSEEPSNVFGSVLKKQVEQRLEFY
Ligand information
>6lqs Chain 5A (length=152) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucgca
gcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaaag
agugcuaugcggagugcgcgagagcauuuccggcagcagagauuucagcu
gu
<<<....>>>...<<<<<<<<<...>>>>>>.>>>...............
.......................<<<...>>>..................
.........<<<<<<<<......>>>>.>>>>.<<<<.<<<..>>>.>>>
>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqs Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		G42 T45 K46 K137
Binding residue
(residue number reindexed from 1)		G40 T43 K44 K135
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0030515 snoRNA binding
Biological Process
GO:0000154 rRNA modification
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqs, PDBe:6lqs, PDBj:6lqs
PDBsum6lqs
PubMed32943522
UniProtQ12460|NOP56_YEAST Nucleolar protein 56 (Gene Name=NOP56)

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