Structure of PDB 6lqr Chain 3D Binding Site BS02

Receptor Information
>6lqr Chain 3D (length=369) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIEYLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVS
FAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASSKKKNITLAISD
KNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQL
GLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWH
FPELAKLVPDNYTFAKLVLFIKDKADDSLHDLANEDSGIAQRVIDNARIS
SETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGA
RLISHAGSLTNLSKQAASTVQILKNKGRISRYLANKCSMASRIDNYSEEP
SNVFGSVLKKQVEQRLEFY
Ligand information
>6lqr Chain 5A (length=192) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqr Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution8.6 Å
Binding residue
(original residue number in PDB)		F41 T45 K46 S90 K137 K140
Binding residue
(residue number reindexed from 1)		F39 T43 K44 S88 K135 K138
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0030515 snoRNA binding
Biological Process
GO:0000154 rRNA modification
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqr, PDBe:6lqr, PDBj:6lqr
PDBsum6lqr
PubMed32943522
UniProtQ12460|NOP56_YEAST Nucleolar protein 56 (Gene Name=NOP56)

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