Structure of PDB 8vty Chain 2S Binding Site BS02
Receptor Information
>8vty Chain 2S (length=110) Species:
300852
(Thermus thermophilus HB8) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
RLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSAS
SLALKLKGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALA
EGAREGGLEF
Ligand information
>8vty Chain 2B (length=120) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggga
<<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>>
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8vty
Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
R15 K19 R25 F29 R30 S31 L32 K33 H34 Y36 Q38 I40 V46 T47 S50 L54 K62 T63 H95 R97
Binding residue
(residue number reindexed from 1)
R13 K17 R23 F27 R28 S29 L30 K31 H32 Y34 Q36 I38 V44 T45 S48 L52 K60 T61 H93 R95
External links
PDB
RCSB:8vty
,
PDBe:8vty
,
PDBj:8vty
PDBsum
8vty
PubMed
39039256
UniProt
Q5SHQ4
|RL18_THET8 Large ribosomal subunit protein uL18 (Gene Name=rplR)
[
Back to BioLiP
]
