Structure of PDB 7qiz Chain z Binding Site BS01

Receptor Information
>7qiz Chain z (length=147) Species: 4081 (Solanum lycopersicum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATE
GTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRY
EKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGS
Ligand information
>7qiz Chain S2 (length=1584) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcauguguaaguaugaacaaauagacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguuacucggauaaccguaguaauuc
uagagcuaauacgugcaccccgaaagggaugcauuuauuagauagcgaug
auucaugauaacucgacggaucgcacggccgccggcgacgcaucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccauggugg
ugacgggugacggagaauuaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
gacacggggagguagugacaauaaauaacaauaccgggagucugguaauu
ggaaugaguacaaucuaaaucccuuaacgaggauccauuggagggcaagu
cuggugccagcagccgcgguaauuccagcuccaauagcguauauuuaagu
uguugcaguuaaaaagcucguaguuggacuuuguguuacuuugaagaaau
uagagugcucaaagcaagccuacgcucuguauacauuagcaugggauaac
auuauaggauuucgguccuaugggaucggaguaaugauuaacagggacag
ucgggggcauucguauuucauagucagaggugaaauucuuggauuuauga
aagacgaacaacugcgaaagcauuugccaaggauguuuucauuaaucaag
aacgaaaguugggggcucgaagacgaucagauaccguccuagucucaacc
auaaacgaugccgaccagggaucggcggauguugcuaggacuccgccggc
accuuaugagaaaucaaaguuuuuggguuccggggggaguauggucgcaa
ggcugaaacuuaaaggaauugacggaagggcaccaccaggaguggagccu
gcggcuuaauuugacucaacacggggaaacuuaccagguccagacauagu
agacugagagcucuuucuaugggugguggugcauggccguucuuaguugg
uggagcgauuugucugguuaauuccguuaacgaacgagaccucagccugc
uaacuagcuaugcggagguucccuucgcggccagcuucuuagagggacua
cggccuuuuaggccgcggaaguuugaggcaauaacaggucugugaugccc
uuagauguucugggccgcacgcgcgcuacacugauguauucaacgagcuu
auagccuuggccgacaggcccggguaaucuuugaaauuucaucgugaugg
ggauagaucauugcaauuguuggucuucaacgaggaauuccuaguaagcg
cgagucaucagcucgcguugacuacgucccugcccuuuguacacaccgcc
cgucgcuccuaccgauugaaugauccggugaaauguucggaucgcggucg
cgagaaguccauugaaccuuaucauuuagaggaaggagaagucguaacaa
gguuuccguaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<......<<.....<..<<<.....>
>>..>......>>.....<<<....>>>......<<<<<<..........
.....>>>>>>.........<<<<.<<<<.>>>>>>>>..>>>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>>>>.........<<<....<<<
.....>>>..>>>..>....>.>.....<<<<<<<<<<..>>>>>>>.>>
>......<<..<...........>..>>.........<<<<<((......
<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>.....
.....<.<((.....<.<<...<<<.<<......<<<<<<.<<.......
<<...<.......>..<<<....>>>.....>>......>>.>>..>>>>
........<<<<<<<<<<<..>>>>>>>>>>>.....>>....<<<<<<.
<<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>>
>>..>>.......<<....>>...>>>>...>>>>>.>>>...>>>...>
>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>.
.........<<<.<<.<<<..<<<<<<<<.<<<.<<>>>>>>>>>>>>>.
.>>>...<<..))>>...>>.....>>>.>.>.<<<......<<<<....
>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<
<<<........<<........>>..........<<<<<......<<<<<.
<<........>>....>>>>>...<<.<<<..<<.<<<<<<....<<<.<
<<<......>>...<<<......>>>...>>.>>>....<<<<<.<<..<
<<<..<<<<.<<<<<<<<...>>>>>>>>...>>>>..>>>>.>>.....
<<<<<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>
>.......>>>>>......>>>>.>>>.....<<<<.<.......<<...
....<<<.<<<<....>>>>.>>>....>>.......>.>>>>.......
....<<<<<<..........>>>>>>..........>>>>>>....<<<<
<<<<.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..
<<.<.<<<<<.<<....<<<<<<<..<<<..<<<<..<...<<<<<..>>
>>>...>..>>>>..>>>..>>>>>>>...>>.>>>>>..>.>>...>..
...<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB7qiz Specific features and methylation sites of a plant ribosome
Resolution2.38 Å
Binding residue
(original residue number in PDB)
E6 K7 P13 F16 R27 K30 Y35 K37 S38 I39 G40 L41 K58 S66 I67 R68 R70 S78 K80 M81 N82 T84 I86 R89 Y91 H93 K96 K97 Y98 R100 K103 R104 H105 S106 N107 Q128 R130 P131 L132 S133 K134 T135 R137 F138 G147
Binding residue
(residue number reindexed from 1)
E5 K6 P12 F15 R26 K29 Y34 K36 S37 I38 G39 L40 K57 S65 I66 R67 R69 S77 K79 M80 N81 T83 I85 R88 Y90 H92 K95 K96 Y97 R99 K102 R103 H104 S105 N106 Q127 R129 P130 L131 S132 K133 T134 R136 F137 G146
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7qiz, PDBe:7qiz, PDBj:7qiz
PDBsum7qiz
PubMed35643637
UniProtK4C998

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